| SRR5560727 | caryopsis | wild_type | 1.32 | MC |
| SRR5560728 | caryopsis | wild_type | 0.59 | MC |
| SRR5560729 | caryopsis | wild_type | 0.53 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.16 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.08 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.13 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.89 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.38 | MC |
| SRR8060835 | leaf | wild_type | 0.37 | MC |
| SRR8060837 | leaf | wild_type | 0.22 | MC |
| SRR504365 | leaf | wt | 0.29 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.08 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.81 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.01 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.09 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.19 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.82 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.52 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR6168974 | leaf | none (control) | 4.47 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.51 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR8582893 | panicle | PM | 0.27 | MC |
| SRR1633182 | panicle | WT | 1.24 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.52 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.97 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.11 | MC |
| SRR5126153 | root | "mock,7_days" | 0.33 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.30 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.52 | MC |
| SRR4947481 | root | control | 0.93 | MC |
| SRR4947483 | root | Al | 0.50 | MC |
| SRR4947499 | root | Al | 0.54 | MC |
| SRR4947504 | root | control | 0.65 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.42 | MC |
| SRR6441554 | seedling | wild_type | 0.26 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098742 | seedling | wt | 0.46 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.13 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.61 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.43 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.90 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.30 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.59 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.79 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.56 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.05 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.48 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.63 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.78 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.26 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.75 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.34 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.16 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.94 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.47 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.27 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |