| SRR4457250 | 2nd_leaf | DAH4 | 2.11 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.57 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.63 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.16 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.21 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.71 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.43 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.30 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.52 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.60 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.42 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.52 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.79 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.84 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.92 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.32 | MC |
| SRR3745125 | anther | wt | 5.44 | MC |
| SRR3745127 | anther | wt | 4.67 | MC |
| SRR358796 | callus | wt | 7.07 | MC |
| SRR358797 | callus | wt | 3.13 | MC |
| SRR358798 | callus | wt | 1.70 | MC |
| SRR5560727 | caryopsis | wild_type | 2.56 | MC |
| SRR5560728 | caryopsis | wild_type | 2.27 | MC |
| SRR5560729 | caryopsis | wild_type | 1.48 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.55 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.97 | MC |
| SRR7265403 | coleoptile | 2dN | 4.06 | MC |
| SRR7265409 | coleoptile | 3dN | 3.76 | MC |
| SRR7265410 | coleoptile | 3dN | 2.07 | MC |
| SRR7265412 | coleoptile | 4dA | 3.12 | MC |
| SRR7265413 | coleoptile | 4dA | 3.87 | MC |
| SRR7265414 | coleoptile | 4dA | 1.79 | MC |
| SRR7265415 | coleoptile | 4dN | 3.01 | MC |
| SRR7265416 | coleoptile | 4dN | 3.63 | MC |
| SRR7265417 | coleoptile | 4dN | 3.97 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.42 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.18 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.72 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.73 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.58 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.81 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.72 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.39 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.59 | MC |
| SRR7265376 | embryo | 1hA | 1.72 | MC |
| SRR7265377 | embryo | 1hA | 3.13 | MC |
| SRR7265378 | embryo | 1hA | 2.82 | MC |
| SRR7265381 | embryo | 1hN | 1.76 | MC |
| SRR7265382 | embryo | 3hA | 3.24 | MC |
| SRR7265383 | embryo | 3hA | 2.09 | MC |
| SRR7265384 | embryo | 3hA | 1.83 | MC |
| SRR7265385 | embryo | 3hN | 2.65 | MC |
| SRR7265386 | embryo | 3hN | 1.70 | MC |
| SRR7265389 | embryo | 12hA | 3.81 | MC |
| SRR7265390 | embryo | 12hA | 4.31 | MC |
| SRR7265391 | embryo | 12hN | 3.68 | MC |
| SRR7265392 | embryo | 12hN | 4.02 | MC |
| SRR7265393 | embryo | 12hN | 3.33 | MC |
| SRR7265395 | embryo | 24hA | 4.75 | MC |
| SRR7265398 | embryo | 24hN | 4.31 | MC |
| SRR7265399 | embryo | 24hN | 3.72 | MC |
| SRR2338867 | endosprem | control | 1.56 | MC |
| SRR2338869 | endosprem | high_temperature | 0.59 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.82 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.80 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.45 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.96 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.98 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.58 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.55 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.59 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.05 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.67 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.86 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.07 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.93 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.21 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.87 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.64 | MC |
| SRR8060835 | leaf | wild_type | 2.24 | MC |
| SRR8060836 | leaf | wild_type | 2.49 | MC |
| SRR8060837 | leaf | wild_type | 2.04 | MC |
| SRR8240824 | leaf | wild_type | 0.77 | MC |
| SRR8240825 | leaf | wild_type | 0.32 | MC |
| SRR8240820 | leaf | wild_type | 0.32 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.75 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.07 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.43 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.91 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.23 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.83 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.29 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.28 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.46 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.38 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.87 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.12 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.01 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.82 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.41 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.41 | MC |
| SRR1761529 | leaf | drought | 1.41 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.52 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.68 | MC |
| SRR6417967 | leaf | H2O_control | 1.57 | MC |
| SRR6417968 | leaf | H2O_control | 2.64 | MC |
| SRR6417969 | leaf | H2O_control | 2.72 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.94 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.84 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.18 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.99 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.51 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.00 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.33 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.19 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.53 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.52 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.05 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.62 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.07 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.30 | MC |
| SRR6502089 | leaf | control | 1.94 | MC |
| SRR6502090 | leaf | control | 1.93 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.27 | MC |
| SRR6502100 | leaf | control | 2.98 | MC |
| SRR6502101 | leaf | control | 1.55 | MC |
| SRR6502102 | leaf | control | 1.92 | MC |
| SRR5856927 | leaf | control | 1.58 | MC |
| SRR5856928 | leaf | control | 1.77 | MC |
| SRR5856934 | leaf | control | 1.17 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.29 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.77 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.64 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.31 | MC |
| SRR6168973 | leaf | none (control) | 1.37 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.72 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 6.23 | MC |
| SRR8582889 | panicle | AM | 1.02 | MC |
| SRR8582890 | panicle | AM | 1.03 | MC |
| SRR8582891 | panicle | PM | 0.53 | MC |
| SRR8582892 | panicle | PM | 3.36 | MC |
| SRR8582893 | panicle | PM | 1.67 | MC |
| SRR5110430 | panicle | Dawn | 4.14 | MC |
| SRR5110432 | panicle | Dawn | 3.71 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.86 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.66 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.82 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.33 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.99 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.06 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.41 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.78 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.60 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.84 | MC |
| SRR1633182 | panicle | WT | 4.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.43 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.53 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.25 | MC |
| SRR5126148 | root | "mock,1_day" | 3.03 | MC |
| SRR5126149 | root | "mock,1_day" | 3.45 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.82 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.99 | MC |
| SRR5126155 | root | "mock,7_days" | 3.89 | MC |
| SRR5126157 | root | "mock,7_days" | 3.64 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.51 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.82 | MC |
| SRR5126165 | root | "mock,14_days" | 4.78 | MC |
| SRR5126167 | root | "mock,14_days" | 2.84 | MC |
| SRR5126169 | root | "mock,14_days" | 4.18 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.96 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.56 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.52 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.27 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.45 | MC |
| SRR6502094 | root | control | 3.64 | MC |
| SRR6502095 | root | control | 1.61 | MC |
| SRR6502096 | root | control | 2.61 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.96 | MC |
| SRR6502106 | root | control | 4.46 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.82 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.94 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.68 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.94 | MC |
| SRR6441554 | seedling | wild_type | 2.36 | MC |
| SRR6441555 | seedling | wild_type | 2.69 | MC |
| SRR3098741 | seedling | wt | 1.25 | MC |
| SRR3098742 | seedling | wt | 1.12 | MC |
| SRR3098743 | seedling | wt | 1.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.17 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.85 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.81 | MC |
| SRR358791 | seedling | wt | 3.80 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.48 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.80 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.81 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.63 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.28 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.17 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.25 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.78 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.13 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.27 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.52 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.78 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.52 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.51 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.04 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.91 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.68 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.04 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.40 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.45 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.21 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 8.01 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.26 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.91 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.10 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.45 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.48 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.27 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.99 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.55 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.93 | MC |