| SRR4457254 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.69 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.43 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.99 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.32 | MC |
| SRR6320473 | carpel | wt | 4.92 | MC |
| SRR6320498 | carpel | wt | 3.29 | MC |
| SRR5560729 | caryopsis | wild_type | 0.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR7265400 | coleoptile | 2dA | 2.59 | MC |
| SRR7265401 | coleoptile | 2dA | 2.90 | MC |
| SRR7265402 | coleoptile | 2dA | 2.05 | MC |
| SRR7265403 | coleoptile | 2dN | 2.85 | MC |
| SRR7265404 | coleoptile | 2dN | 1.75 | MC |
| SRR7265405 | coleoptile | 2dN | 1.56 | MC |
| SRR7265406 | coleoptile | 3dA | 2.43 | MC |
| SRR7265407 | coleoptile | 3dA | 2.67 | MC |
| SRR7265408 | coleoptile | 3dA | 1.13 | MC |
| SRR7265409 | coleoptile | 3dN | 1.71 | MC |
| SRR7265410 | coleoptile | 3dN | 1.45 | MC |
| SRR7265411 | coleoptile | 3dN | 2.18 | MC |
| SRR7265412 | coleoptile | 4dA | 2.23 | MC |
| SRR7265413 | coleoptile | 4dA | 3.90 | MC |
| SRR7265414 | coleoptile | 4dA | 2.28 | MC |
| SRR7265415 | coleoptile | 4dN | 2.45 | MC |
| SRR7265416 | coleoptile | 4dN | 2.25 | MC |
| SRR7265417 | coleoptile | 4dN | 3.14 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.88 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.68 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.14 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.09 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.94 | MC |
| SRR7265376 | embryo | 1hA | 1.99 | MC |
| SRR7265377 | embryo | 1hA | 1.99 | MC |
| SRR7265383 | embryo | 3hA | 4.39 | MC |
| SRR7265385 | embryo | 3hN | 4.24 | MC |
| SRR7265387 | embryo | 3hN | 2.24 | MC |
| SRR7265388 | embryo | 12hA | 3.16 | MC |
| SRR7265389 | embryo | 12hA | 2.32 | MC |
| SRR7265391 | embryo | 12hN | 3.15 | MC |
| SRR7265392 | embryo | 12hN | 3.76 | MC |
| SRR7265393 | embryo | 12hN | 2.47 | MC |
| SRR7265394 | embryo | 24hA | 5.16 | MC |
| SRR7265395 | embryo | 24hA | 3.50 | MC |
| SRR7265397 | embryo | 24hN | 3.37 | MC |
| SRR7265398 | embryo | 24hN | 2.69 | MC |
| SRR7265399 | embryo | 24hN | 3.03 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.31 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.66 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.41 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.10 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.21 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.82 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.11 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.39 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.77 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.19 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.72 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.42 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.26 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.42 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.59 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.27 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.83 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.67 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.30 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.30 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.14 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.17 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.99 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.64 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.99 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.51 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.94 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.51 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.94 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.51 | MC |
| SRR1761528 | leaf | drought | 1.94 | MC |
| SRR1761529 | leaf | drought | 1.51 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.94 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.75 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.50 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.85 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.87 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.76 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.83 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.49 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR1213692 | leaf | wt | 1.21 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.40 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502089 | leaf | control | 1.00 | MC |
| SRR5856930 | leaf | salt | 0.38 | MC |
| SRR5856931 | leaf | salt | 0.74 | MC |
| SRR5856932 | leaf | salt | 0.46 | MC |
| SRR5856933 | leaf | control | 0.71 | MC |
| SRR5856934 | leaf | control | 0.44 | MC |
| SRR5856935 | leaf | control | 0.47 | MC |
| SRR5856936 | leaf | salt | 0.40 | MC |
| SRR5856938 | leaf | salt | 0.68 | MC |
| SRR6168979 | leaf | none (control) | 0.42 | MC |
| SRR5110429 | panicle | Dawn | 2.60 | MC |
| SRR5110431 | panicle | Dawn | 1.49 | MC |
| SRR5110432 | panicle | Dawn | 2.05 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.42 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.33 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.67 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.63 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.70 | MC |
| SRR5110445 | panicle | Dusk | 2.81 | MC |
| SRR5110446 | panicle | Dusk | 1.06 | MC |
| SRR5110447 | panicle | Dusk | 0.71 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.65 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.20 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.22 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.46 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.77 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.07 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.27 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.57 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.86 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.95 | MC |
| SRR1633185 | panicle | WT | 1.72 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.45 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.37 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.46 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126153 | root | "mock,7_days" | 0.67 | MC |
| SRR5126155 | root | "mock,7_days" | 0.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.35 | MC |
| SRR5126167 | root | "mock,14_days" | 0.76 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR1213695 | root | wt | 0.54 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.62 | MC |
| SRR2154086 | seedling | wt | 0.81 | MC |
| SRR2154082 | seedling | wt | 0.49 | MC |
| SRR2154083 | seedling | wt | 1.78 | MC |
| SRR2154084 | seedling | wt | 0.72 | MC |
| SRR2154085 | seedling | wt | 0.45 | MC |
| SRR3098741 | seedling | wt | 0.41 | MC |
| SRR3098742 | seedling | wt | 0.64 | MC |
| SRR3098743 | seedling | wt | 0.40 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.16 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.43 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.20 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.18 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.42 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.19 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |