| SRR6320498 | carpel | wt | 2.01 | MC |
| SRR5560728 | caryopsis | wild_type | 0.47 | MC |
| SRR5560729 | caryopsis | wild_type | 0.92 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.88 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.13 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.91 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.34 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.05 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.35 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.36 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.66 | MC |
| SRR1213691 | flower | wt | 0.66 | MC |
| SRR8060835 | leaf | wild_type | 1.93 | MC |
| SRR8240824 | leaf | wild_type | 1.05 | MC |
| SRR8240818 | leaf | wild_type | 0.25 | MC |
| SRR8240819 | leaf | wild_type | 0.38 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.48 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.56 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.09 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.89 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.22 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.87 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.87 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.33 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.69 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.16 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.48 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.71 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.26 | MC |
| SRR504365 | leaf | wt | 2.91 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.62 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.47 | MC |
| SRR6417968 | leaf | H2O_control | 1.15 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.92 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.47 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.35 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.88 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.30 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.78 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.28 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.15 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.68 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.83 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.40 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.24 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.72 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.53 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.41 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.15 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.69 | MC |
| SRR1213692 | leaf | wt | 1.45 | MC |
| SRR1213693 | leaf | wt | 0.67 | MC |
| SRR5856927 | leaf | control | 2.25 | MC |
| SRR5856928 | leaf | control | 1.07 | MC |
| SRR5856929 | leaf | control | 0.90 | MC |
| SRR5856930 | leaf | salt | 1.63 | MC |
| SRR5856931 | leaf | salt | 1.71 | MC |
| SRR5856932 | leaf | salt | 1.85 | MC |
| SRR5856933 | leaf | control | 0.82 | MC |
| SRR5856934 | leaf | control | 2.24 | MC |
| SRR5856935 | leaf | control | 1.25 | MC |
| SRR5856937 | leaf | salt | 1.50 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.06 | MC |
| SRR6168973 | leaf | none (control) | 0.25 | MC |
| SRR6168974 | leaf | none (control) | 0.38 | MC |
| SRR6168975 | leaf | none (control) | 0.51 | MC |
| SRR6168981 | leaf | none (control) | 0.23 | MC |
| SRR8582889 | panicle | AM | 0.23 | MC |
| SRR8582890 | panicle | AM | 0.27 | MC |
| SRR8582891 | panicle | PM | 0.77 | MC |
| SRR8582893 | panicle | PM | 0.99 | MC |
| SRR5110430 | panicle | Dawn | 1.38 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.77 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.78 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.91 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.28 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.35 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.42 | MC |
| SRR5110445 | panicle | Dusk | 0.49 | MC |
| SRR5110446 | panicle | Dusk | 1.07 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.97 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.21 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.22 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.67 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.14 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.88 | MC |
| SRR5126147 | root | "mock,1_day" | 2.75 | MC |
| SRR5126148 | root | "mock,1_day" | 2.29 | MC |
| SRR5126149 | root | "mock,1_day" | 2.71 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.17 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.86 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.25 | MC |
| SRR5126153 | root | "mock,7_days" | 1.40 | MC |
| SRR5126155 | root | "mock,7_days" | 2.48 | MC |
| SRR5126157 | root | "mock,7_days" | 3.31 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.64 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.91 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.68 | MC |
| SRR5126165 | root | "mock,14_days" | 2.65 | MC |
| SRR5126167 | root | "mock,14_days" | 1.71 | MC |
| SRR5126169 | root | "mock,14_days" | 2.34 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.52 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.42 | MC |
| SRR1213695 | root | wt | 2.00 | MC |
| SRR4947483 | root | Al | 1.41 | MC |
| SRR4947487 | root | control | 1.28 | MC |
| SRR4947490 | root | Al | 4.41 | MC |
| SRR4947499 | root | Al | 1.62 | MC |
| SRR4947503 | root | control | 1.61 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.63 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.48 | MC |
| SRR6441555 | seedling | wild_type | 0.92 | MC |
| SRR2154086 | seedling | wt | 1.93 | MC |
| SRR2154082 | seedling | wt | 0.61 | MC |
| SRR3098741 | seedling | wt | 1.54 | MC |
| SRR3098742 | seedling | wt | 1.10 | MC |
| SRR3098743 | seedling | wt | 1.74 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.71 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.53 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.64 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.36 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.40 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.92 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.14 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.74 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.14 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.04 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.95 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.92 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.59 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.32 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.06 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.23 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.47 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.91 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.25 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.69 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.34 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |