| SRR5560728 | caryopsis | wild_type | 1.65 | MC |
| SRR5560729 | caryopsis | wild_type | 0.46 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR4947495 | root | control | 0.52 | MC |
| SRR7265401 | coleoptile | 2dA | 0.41 | MC |
| SRR7265406 | coleoptile | 3dA | 0.34 | MC |
| SRR7265412 | coleoptile | 4dA | 1.04 | MC |
| SRR7265413 | coleoptile | 4dA | 0.66 | MC |
| SRR7265414 | coleoptile | 4dA | 0.74 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.72 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.82 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.59 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.22 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR1213691 | flower | wt | 0.41 | MC |
| SRR8240824 | leaf | wild_type | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.24 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.13 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.02 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.72 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.92 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.76 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.16 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.71 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.25 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.03 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.90 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.39 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.39 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.66 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.00 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.22 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.84 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.59 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.50 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.82 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.46 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.04 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.70 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.13 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.29 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.12 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.79 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.68 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.55 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.08 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.41 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.97 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.55 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.08 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.83 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.24 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.24 | MC |
| SRR1761528 | leaf | drought | 2.24 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.29 | MC |
| SRR6417967 | leaf | H2O_control | 2.96 | MC |
| SRR6417968 | leaf | H2O_control | 2.12 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.01 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.64 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.52 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.99 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.80 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.20 | MC |
| SRR1213693 | leaf | wt | 0.40 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.14 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.83 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR6502088 | leaf | control | 0.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6168975 | leaf | none (control) | 3.84 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.20 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.00 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.58 | MC |
| SRR5110429 | panicle | Dawn | 0.55 | MC |
| SRR5110431 | panicle | Dawn | 0.78 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.38 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.64 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.51 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110446 | panicle | Dusk | 0.82 | MC |
| SRR5110448 | panicle | Dusk | 0.54 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.35 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.34 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.37 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.56 | MC |
| SRR5126147 | root | "mock,1_day" | 1.21 | MC |
| SRR5126148 | root | "mock,1_day" | 0.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.07 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.11 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.37 | MC |
| SRR5126157 | root | "mock,7_days" | 0.67 | MC |
| SRR5126167 | root | "mock,14_days" | 1.50 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR1213695 | root | wt | 0.58 | MC |
| SRR4947490 | root | Al | 0.50 | MC |
| SRR6441554 | seedling | wild_type | 1.12 | MC |
| SRR6441555 | seedling | wild_type | 2.55 | MC |
| SRR2154086 | seedling | wt | 1.49 | MC |
| SRR2154082 | seedling | wt | 1.40 | MC |
| SRR2154083 | seedling | wt | 1.84 | MC |
| SRR2154084 | seedling | wt | 2.91 | MC |
| SRR2154085 | seedling | wt | 1.24 | MC |
| SRR2154087 | seedling | wt | 1.87 | MC |
| SRR3098741 | seedling | wt | 1.62 | MC |
| SRR3098742 | seedling | wt | 1.15 | MC |
| SRR3098743 | seedling | wt | 1.07 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.69 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.89 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.71 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.56 | MC |
| SRR1944583 | seedling | no_treatment | 2.67 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.45 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.00 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.03 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.41 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.17 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.17 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.95 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.19 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.09 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.55 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.48 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.24 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.01 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.35 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.30 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.23 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.23 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.19 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.87 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.33 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.40 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.32 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.86 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.53 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.61 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |