| SRR4457249 | 2nd_leaf | DAH4 | 0.59 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.48 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.53 | MC |
| SRR358795 | callus | wt | 2.11 | MC |
| SRR358796 | callus | wt | 4.11 | MC |
| SRR358797 | callus | wt | 1.83 | MC |
| SRR358798 | callus | wt | 2.12 | MC |
| SRR5560727 | caryopsis | wild_type | 0.62 | MC |
| SRR5560728 | caryopsis | wild_type | 0.98 | MC |
| SRR7265400 | coleoptile | 2dA | 1.65 | MC |
| SRR7265401 | coleoptile | 2dA | 1.42 | MC |
| SRR7265402 | coleoptile | 2dA | 1.56 | MC |
| SRR7265403 | coleoptile | 2dN | 2.18 | MC |
| SRR7265404 | coleoptile | 2dN | 1.75 | MC |
| SRR7265405 | coleoptile | 2dN | 1.90 | MC |
| SRR7265412 | coleoptile | 4dA | 0.77 | MC |
| SRR7265413 | coleoptile | 4dA | 0.89 | MC |
| SRR7265414 | coleoptile | 4dA | 2.00 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR7265394 | embryo | 24hA | 3.87 | MC |
| SRR7265395 | embryo | 24hA | 1.85 | MC |
| SRR7265396 | embryo | 24hA | 2.95 | MC |
| SRR7265398 | embryo | 24hN | 0.44 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.21 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.51 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.23 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.29 | MC |
| SRR8240824 | leaf | wild_type | 0.65 | MC |
| SRR8240825 | leaf | wild_type | 2.55 | MC |
| SRR8240826 | leaf | wild_type | 1.27 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.57 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.33 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.21 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.88 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.96 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.61 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.18 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.06 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.25 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.43 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.34 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.68 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.38 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.22 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.99 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.68 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.39 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.64 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.70 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.61 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.13 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.52 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.52 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.15 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.94 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.94 | MC |
| SRR1761528 | leaf | drought | 0.94 | MC |
| SRR504365 | leaf | wt | 1.46 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.55 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.72 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.44 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.83 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.98 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.20 | MC |
| SRR1213692 | leaf | wt | 0.31 | MC |
| SRR5856927 | leaf | control | 0.39 | MC |
| SRR5856928 | leaf | control | 0.21 | MC |
| SRR5856929 | leaf | control | 0.41 | MC |
| SRR5856933 | leaf | control | 0.98 | MC |
| SRR5856934 | leaf | control | 0.36 | MC |
| SRR5856935 | leaf | control | 0.40 | MC |
| SRR5856937 | leaf | salt | 0.18 | MC |
| SRR5856938 | leaf | salt | 0.22 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.29 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.33 | MC |
| SRR6168973 | leaf | none (control) | 0.60 | MC |
| SRR6168981 | leaf | none (control) | 0.88 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.24 | MC |
| SRR1633182 | panicle | WT | 0.49 | MC |
| SRR1633185 | panicle | WT | 0.39 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.38 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.62 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.63 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.40 | MC |
| SRR1213695 | root | wt | 3.15 | MC |
| SRR4947478 | root | control | 0.91 | MC |
| SRR4947479 | root | control | 1.35 | MC |
| SRR4947482 | root | Al | 1.36 | MC |
| SRR4947483 | root | Al | 1.79 | MC |
| SRR4947487 | root | control | 0.85 | MC |
| SRR4947490 | root | Al | 1.01 | MC |
| SRR4947491 | root | Al | 1.24 | MC |
| SRR4947494 | root | control | 0.78 | MC |
| SRR4947499 | root | Al | 1.75 | MC |
| SRR4947503 | root | control | 2.17 | MC |
| SRR4947506 | root | Al | 1.22 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.33 | MC |
| SRR6441555 | seedling | wild_type | 1.21 | MC |
| SRR2154083 | seedling | wt | 1.83 | MC |
| SRR2154084 | seedling | wt | 2.99 | MC |
| SRR3098742 | seedling | wt | 0.92 | MC |
| SRR3098743 | seedling | wt | 1.07 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.54 | MC |
| SRR358793 | seedling | wt | 1.75 | MC |
| SRR358794 | seedling | wt | 2.39 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.77 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.74 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.47 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.88 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.31 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.57 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.93 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.70 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.59 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.57 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.54 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.84 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.95 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.65 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.86 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.79 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.23 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.90 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.43 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.03 | MC |