| SRR358795 | callus | wt | 3.19 | MC |
| SRR358796 | callus | wt | 1.81 | MC |
| SRR358797 | callus | wt | 2.61 | MC |
| SRR358798 | callus | wt | 2.08 | MC |
| SRR6320498 | carpel | wt | 1.28 | MC |
| SRR5560728 | caryopsis | wild_type | 0.30 | MC |
| SRR5560729 | caryopsis | wild_type | 0.78 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.76 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR4947495 | root | control | 4.80 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.35 | MC |
| SRR7265400 | coleoptile | 2dA | 1.18 | MC |
| SRR7265401 | coleoptile | 2dA | 2.06 | MC |
| SRR7265402 | coleoptile | 2dA | 2.16 | MC |
| SRR7265403 | coleoptile | 2dN | 3.67 | MC |
| SRR7265404 | coleoptile | 2dN | 3.32 | MC |
| SRR7265405 | coleoptile | 2dN | 2.03 | MC |
| SRR7265406 | coleoptile | 3dA | 1.12 | MC |
| SRR7265407 | coleoptile | 3dA | 1.71 | MC |
| SRR7265408 | coleoptile | 3dA | 0.89 | MC |
| SRR7265409 | coleoptile | 3dN | 3.79 | MC |
| SRR7265410 | coleoptile | 3dN | 3.51 | MC |
| SRR7265411 | coleoptile | 3dN | 2.30 | MC |
| SRR7265413 | coleoptile | 4dA | 0.92 | MC |
| SRR7265415 | coleoptile | 4dN | 3.29 | MC |
| SRR7265416 | coleoptile | 4dN | 2.29 | MC |
| SRR7265417 | coleoptile | 4dN | 3.70 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.24 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.84 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.81 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.53 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.48 | MC |
| SRR7265388 | embryo | 12hA | 2.27 | MC |
| SRR7265389 | embryo | 12hA | 3.14 | MC |
| SRR7265390 | embryo | 12hA | 2.20 | MC |
| SRR7265391 | embryo | 12hN | 1.35 | MC |
| SRR7265392 | embryo | 12hN | 1.58 | MC |
| SRR7265393 | embryo | 12hN | 1.82 | MC |
| SRR7265394 | embryo | 24hA | 2.74 | MC |
| SRR7265395 | embryo | 24hA | 3.86 | MC |
| SRR7265396 | embryo | 24hA | 3.20 | MC |
| SRR7265397 | embryo | 24hN | 4.94 | MC |
| SRR7265398 | embryo | 24hN | 4.44 | MC |
| SRR7265399 | embryo | 24hN | 3.57 | MC |
| SRR2338868 | endosprem | high_temperature | 1.28 | MC |
| SRR2338869 | endosprem | high_temperature | 1.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.95 | MC |
| SRR1213691 | flower | wt | 3.08 | MC |
| SRR8060836 | leaf | wild_type | 1.97 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.84 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.36 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.68 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.68 | MC |
| SRR1761531 | leaf | control | 0.68 | MC |
| SRR504365 | leaf | wt | 1.05 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.59 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.28 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.70 | MC |
| SRR5856927 | leaf | control | 1.43 | MC |
| SRR5856928 | leaf | control | 1.26 | MC |
| SRR5856929 | leaf | control | 1.57 | MC |
| SRR5856930 | leaf | salt | 1.22 | MC |
| SRR5856931 | leaf | salt | 0.92 | MC |
| SRR5856932 | leaf | salt | 0.47 | MC |
| SRR5856933 | leaf | control | 2.38 | MC |
| SRR5856934 | leaf | control | 1.64 | MC |
| SRR5856935 | leaf | control | 1.53 | MC |
| SRR5856936 | leaf | salt | 1.17 | MC |
| SRR5856937 | leaf | salt | 1.21 | MC |
| SRR5856938 | leaf | salt | 0.77 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.31 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.69 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.18 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.09 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 7.53 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.09 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.68 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.86 | MC |
| SRR6168973 | leaf | none (control) | 0.32 | MC |
| SRR6168974 | leaf | none (control) | 0.44 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.47 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.59 | MC |
| SRR1633182 | panicle | WT | 1.35 | MC |
| SRR1633185 | panicle | WT | 1.01 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.42 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.13 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.55 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.52 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.84 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.84 | MC |
| SRR5126147 | root | "mock,1_day" | 1.68 | MC |
| SRR5126148 | root | "mock,1_day" | 1.04 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.69 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.54 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126153 | root | "mock,7_days" | 2.48 | MC |
| SRR5126155 | root | "mock,7_days" | 1.32 | MC |
| SRR5126157 | root | "mock,7_days" | 2.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.90 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126165 | root | "mock,14_days" | 2.52 | MC |
| SRR5126167 | root | "mock,14_days" | 0.96 | MC |
| SRR5126169 | root | "mock,14_days" | 0.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.72 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.33 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.41 | MC |
| SRR4947478 | root | control | 4.21 | MC |
| SRR4947499 | root | Al | 4.95 | MC |
| SRR4947501 | root | Al | 1.50 | MC |
| SRR4947505 | root | control | 0.94 | MC |
| SRR4947508 | root | Al | 0.93 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.44 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.47 | MC |
| SRR6502094 | root | control | 0.62 | MC |
| SRR6502095 | root | control | 0.92 | MC |
| SRR6502096 | root | control | 0.46 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.26 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.28 | MC |
| SRR6502106 | root | control | 0.46 | MC |
| SRR6502107 | root | control | 1.30 | MC |
| SRR6502108 | root | control | 1.15 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.35 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.35 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.12 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.03 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.88 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.41 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.00 | MC |
| SRR6441555 | seedling | wild_type | 0.40 | MC |
| SRR2154086 | seedling | wt | 1.15 | MC |
| SRR2154082 | seedling | wt | 2.88 | MC |
| SRR2154087 | seedling | wt | 1.30 | MC |
| SRR3098742 | seedling | wt | 0.29 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.91 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.95 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.04 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.57 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.76 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.48 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.71 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.67 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.59 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.41 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.96 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.69 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.06 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.90 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.98 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.57 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.93 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.54 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.65 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.23 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.89 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.48 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.36 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.90 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.68 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.64 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.62 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.27 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.95 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.95 | MC |