| SRR4457265 | 2nd_leaf | DAH44 | 0.64 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.74 | MC |
| SRR5560727 | caryopsis | wild_type | 1.35 | MC |
| SRR5560728 | caryopsis | wild_type | 1.26 | MC |
| SRR5560729 | caryopsis | wild_type | 2.93 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.27 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.73 | MC |
| SRR7265400 | coleoptile | 2dA | 0.97 | MC |
| SRR7265401 | coleoptile | 2dA | 0.67 | MC |
| SRR7265402 | coleoptile | 2dA | 0.71 | MC |
| SRR7265404 | coleoptile | 2dN | 0.52 | MC |
| SRR7265405 | coleoptile | 2dN | 0.40 | MC |
| SRR7265406 | coleoptile | 3dA | 1.28 | MC |
| SRR7265407 | coleoptile | 3dA | 1.40 | MC |
| SRR7265408 | coleoptile | 3dA | 0.78 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.21 | MC |
| SRR7265376 | embryo | 1hA | 0.33 | MC |
| SRR7265382 | embryo | 3hA | 0.57 | MC |
| SRR7265386 | embryo | 3hN | 0.41 | MC |
| SRR7265387 | embryo | 3hN | 0.46 | MC |
| SRR7265393 | embryo | 12hN | 0.59 | MC |
| SRR7265396 | embryo | 24hA | 0.63 | MC |
| SRR7265398 | embryo | 24hN | 0.60 | MC |
| SRR2338866 | endosprem | control | 1.01 | MC |
| SRR976168 | flag_leaf | wild_type | 2.28 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.41 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.98 | MC |
| SRR1213691 | flower | wt | 2.10 | MC |
| SRR8240824 | leaf | wild_type | 1.57 | MC |
| SRR8240825 | leaf | wild_type | 0.46 | MC |
| SRR8240826 | leaf | wild_type | 0.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.61 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.36 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.46 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.46 | MC |
| SRR1761529 | leaf | drought | 0.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.57 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.53 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.31 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.22 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.08 | MC |
| SRR5856927 | leaf | control | 2.15 | MC |
| SRR5856929 | leaf | control | 1.75 | MC |
| SRR5856930 | leaf | salt | 1.35 | MC |
| SRR5856931 | leaf | salt | 1.14 | MC |
| SRR5856933 | leaf | control | 2.51 | MC |
| SRR5856934 | leaf | control | 2.25 | MC |
| SRR5856935 | leaf | control | 1.60 | MC |
| SRR6168973 | leaf | none (control) | 0.38 | MC |
| SRR1633182 | panicle | WT | 4.52 | MC |
| SRR1633185 | panicle | WT | 5.19 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.85 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.71 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.15 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.90 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.21 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.92 | MC |
| SRR5126167 | root | "mock,14_days" | 0.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.48 | MC |
| SRR1213694 | root | wt | 0.67 | MC |
| SRR4947484 | root | Al | 0.60 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.41 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.35 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.26 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.24 | MC |
| SRR6441554 | seedling | wild_type | 1.69 | MC |
| SRR6441555 | seedling | wild_type | 1.16 | MC |
| SRR2154086 | seedling | wt | 1.34 | MC |
| SRR2154087 | seedling | wt | 0.31 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098742 | seedling | wt | 0.17 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.73 | MC |
| SRR1944583 | seedling | no_treatment | 0.43 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.62 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.53 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.96 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.65 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.23 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.40 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.97 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.05 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.53 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.88 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.69 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.32 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.34 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.38 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.32 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.33 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.08 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.65 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.67 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.07 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.97 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.97 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.27 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.02 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.02 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.01 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.80 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.95 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.76 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.27 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.81 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.48 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.81 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.94 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.86 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.38 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.46 | MC |