| SRR4457251 | 2nd_leaf | DAH4 | 0.41 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR3745125 | anther | wt | 0.69 | MC |
| SRR358795 | callus | wt | 1.97 | MC |
| SRR5560727 | caryopsis | wild_type | 1.73 | MC |
| SRR5560728 | caryopsis | wild_type | 1.53 | MC |
| SRR5560729 | caryopsis | wild_type | 1.42 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.82 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.04 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.14 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.74 | MC |
| SRR7265408 | coleoptile | 3dA | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.60 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.18 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.86 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.42 | MC |
| SRR7265376 | embryo | 1hA | 0.51 | MC |
| SRR7265377 | embryo | 1hA | 0.46 | MC |
| SRR7265386 | embryo | 3hN | 0.29 | MC |
| SRR7265390 | embryo | 12hA | 0.38 | MC |
| SRR7265393 | embryo | 12hN | 0.57 | MC |
| SRR7265396 | embryo | 24hA | 0.56 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.41 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.71 | MC |
| SRR1213691 | flower | wt | 0.55 | MC |
| SRR8240824 | leaf | wild_type | 1.43 | MC |
| SRR8240825 | leaf | wild_type | 0.44 | MC |
| SRR8240826 | leaf | wild_type | 0.38 | MC |
| SRR8240819 | leaf | wild_type | 0.40 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.06 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.75 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.39 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.88 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.39 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.97 | MC |
| SRR6502090 | leaf | control | 0.65 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502101 | leaf | control | 0.43 | MC |
| SRR6168973 | leaf | none (control) | 1.09 | MC |
| SRR6168974 | leaf | none (control) | 0.77 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.52 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.21 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.40 | MC |
| SRR5126147 | root | "mock,1_day" | 1.96 | MC |
| SRR5126148 | root | "mock,1_day" | 2.21 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.99 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.11 | MC |
| SRR5126153 | root | "mock,7_days" | 0.93 | MC |
| SRR5126155 | root | "mock,7_days" | 1.02 | MC |
| SRR5126157 | root | "mock,7_days" | 2.67 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.03 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.58 | MC |
| SRR5126165 | root | "mock,14_days" | 0.57 | MC |
| SRR5126167 | root | "mock,14_days" | 0.48 | MC |
| SRR5126169 | root | "mock,14_days" | 0.74 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.68 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.57 | MC |
| SRR1213694 | root | wt | 0.22 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.14 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.99 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502094 | root | control | 1.57 | MC |
| SRR6502095 | root | control | 0.88 | MC |
| SRR6502096 | root | control | 0.57 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502106 | root | control | 1.36 | MC |
| SRR6502107 | root | control | 0.49 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.02 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.06 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.51 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.38 | MC |
| SRR6441555 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.64 | MC |
| SRR2154083 | seedling | wt | 0.47 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.31 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.41 | MC |
| SRR1944583 | seedling | no_treatment | 0.46 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.95 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.27 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.04 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.88 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.07 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.74 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.96 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.29 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.64 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.86 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.81 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.38 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.79 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.94 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.02 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.92 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.67 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.79 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.82 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.72 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.55 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.93 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.15 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.83 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.70 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.76 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.68 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.06 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.25 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.21 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.31 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.32 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.07 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.42 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.77 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.40 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.24 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.95 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.17 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.37 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.10 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.52 | MC |