| SRR5560728 | caryopsis | wild_type | 0.82 | MC |
| SRR5560729 | caryopsis | wild_type | 1.88 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.80 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.18 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.99 | MC |
| SRR7265403 | coleoptile | 2dN | 2.84 | MC |
| SRR7265404 | coleoptile | 2dN | 1.79 | MC |
| SRR7265405 | coleoptile | 2dN | 2.43 | MC |
| SRR7265409 | coleoptile | 3dN | 2.58 | MC |
| SRR7265410 | coleoptile | 3dN | 0.80 | MC |
| SRR7265411 | coleoptile | 3dN | 1.50 | MC |
| SRR7265412 | coleoptile | 4dA | 2.21 | MC |
| SRR7265415 | coleoptile | 4dN | 4.57 | MC |
| SRR7265417 | coleoptile | 4dN | 3.95 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.44 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.71 | MC |
| SRR7265376 | embryo | 1hA | 1.12 | MC |
| SRR7265377 | embryo | 1hA | 2.04 | MC |
| SRR7265378 | embryo | 1hA | 0.94 | MC |
| SRR7265379 | embryo | 1hN | 1.22 | MC |
| SRR7265380 | embryo | 1hN | 1.11 | MC |
| SRR7265381 | embryo | 1hN | 1.29 | MC |
| SRR7265382 | embryo | 3hA | 1.19 | MC |
| SRR7265383 | embryo | 3hA | 1.83 | MC |
| SRR7265384 | embryo | 3hA | 1.26 | MC |
| SRR7265385 | embryo | 3hN | 0.96 | MC |
| SRR7265386 | embryo | 3hN | 0.90 | MC |
| SRR7265387 | embryo | 3hN | 1.10 | MC |
| SRR7265388 | embryo | 12hA | 3.54 | MC |
| SRR7265389 | embryo | 12hA | 1.68 | MC |
| SRR7265390 | embryo | 12hA | 2.27 | MC |
| SRR7265391 | embryo | 12hN | 1.97 | MC |
| SRR7265392 | embryo | 12hN | 0.95 | MC |
| SRR7265393 | embryo | 12hN | 2.06 | MC |
| SRR7265394 | embryo | 24hA | 1.94 | MC |
| SRR7265396 | embryo | 24hA | 2.10 | MC |
| SRR7265397 | embryo | 24hN | 1.00 | MC |
| SRR7265398 | embryo | 24hN | 0.93 | MC |
| SRR7265399 | embryo | 24hN | 2.66 | MC |
| SRR2338866 | endosprem | control | 1.87 | MC |
| SRR2338869 | endosprem | high_temperature | 0.62 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.23 | MC |
| SRR1213691 | flower | wt | 1.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.43 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.54 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.06 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.02 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.45 | MC |
| SRR5856930 | leaf | salt | 0.18 | MC |
| SRR5856934 | leaf | control | 0.24 | MC |
| SRR5856937 | leaf | salt | 0.17 | MC |
| SRR5856938 | leaf | salt | 0.74 | MC |
| SRR6168973 | leaf | none (control) | 1.17 | MC |
| SRR6168974 | leaf | none (control) | 1.20 | MC |
| SRR6168975 | leaf | none (control) | 1.11 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.38 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.94 | MC |
| SRR5110429 | panicle | Dawn | 0.62 | MC |
| SRR5110430 | panicle | Dawn | 1.18 | MC |
| SRR5110431 | panicle | Dawn | 3.07 | MC |
| SRR5110432 | panicle | Dawn | 0.84 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.65 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.37 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.25 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.96 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.83 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.93 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.85 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.37 | MC |
| SRR5110445 | panicle | Dusk | 1.14 | MC |
| SRR5110446 | panicle | Dusk | 0.76 | MC |
| SRR5110447 | panicle | Dusk | 0.93 | MC |
| SRR5110448 | panicle | Dusk | 0.82 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.43 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.59 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.63 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.62 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.63 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.32 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.81 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.76 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.07 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.75 | MC |
| SRR1633182 | panicle | WT | 3.52 | MC |
| SRR1633185 | panicle | WT | 5.48 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.91 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.29 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.13 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.56 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.78 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.81 | MC |
| SRR5126147 | root | "mock,1_day" | 1.75 | MC |
| SRR5126148 | root | "mock,1_day" | 0.76 | MC |
| SRR5126149 | root | "mock,1_day" | 1.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126153 | root | "mock,7_days" | 0.89 | MC |
| SRR5126155 | root | "mock,7_days" | 1.22 | MC |
| SRR5126157 | root | "mock,7_days" | 1.01 | MC |
| SRR5126165 | root | "mock,14_days" | 0.96 | MC |
| SRR5126167 | root | "mock,14_days" | 0.96 | MC |
| SRR5126169 | root | "mock,14_days" | 1.04 | MC |
| SRR4947482 | root | Al | 0.77 | MC |
| SRR4947483 | root | Al | 0.81 | MC |
| SRR4947484 | root | Al | 0.96 | MC |
| SRR4947485 | root | Al | 0.88 | MC |
| SRR4947488 | root | control | 0.95 | MC |
| SRR4947489 | root | control | 0.74 | MC |
| SRR4947499 | root | Al | 1.75 | MC |
| SRR4947501 | root | Al | 0.79 | MC |
| SRR4947506 | root | Al | 0.52 | MC |
| SRR4947508 | root | Al | 2.05 | MC |
| SRR4947509 | root | Al | 2.31 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502096 | root | control | 0.35 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.31 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502106 | root | control | 0.64 | MC |
| SRR6502107 | root | control | 0.78 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.00 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.28 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.51 | MC |
| SRR6441554 | seedling | wild_type | 1.20 | MC |
| SRR6441555 | seedling | wild_type | 0.36 | MC |
| SRR2154086 | seedling | wt | 1.17 | MC |
| SRR2154082 | seedling | wt | 0.73 | MC |
| SRR2154087 | seedling | wt | 0.65 | MC |
| SRR3098741 | seedling | wt | 1.51 | MC |
| SRR3098742 | seedling | wt | 2.09 | MC |
| SRR3098743 | seedling | wt | 1.33 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.33 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.73 | MC |
| SRR1944583 | seedling | no_treatment | 1.22 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.55 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.94 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.89 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.69 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.89 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.83 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.61 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.52 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.64 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.86 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.36 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.52 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.50 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.89 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.94 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.55 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.44 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.93 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.66 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.17 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.69 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.71 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |