| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.40 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.36 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.78 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.00 | MC |
| SRR358796 | callus | wt | 1.60 | MC |
| SRR358797 | callus | wt | 1.15 | MC |
| SRR358798 | callus | wt | 1.42 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.37 | MC |
| SRR2338868 | endosprem | high_temperature | 0.58 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.52 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.30 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.46 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.50 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.68 | MC |
| SRR1213691 | flower | wt | 0.68 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.80 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.05 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.44 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.83 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.06 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.43 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.19 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.19 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.32 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.80 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.00 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.56 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.78 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.97 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.94 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.30 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.82 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.17 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.63 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.97 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.81 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.14 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.95 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.68 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.91 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.46 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.16 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.74 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.02 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.98 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.99 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.93 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.56 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.43 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.68 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.28 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.72 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.68 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.28 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.72 | MC |
| SRR1761528 | leaf | drought | 1.49 | MC |
| SRR1761529 | leaf | drought | 1.68 | MC |
| SRR1761530 | leaf | control | 2.22 | MC |
| SRR1761531 | leaf | control | 2.72 | MC |
| SRR504365 | leaf | wt | 1.71 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.39 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.44 | MC |
| SRR6417969 | leaf | H2O_control | 0.55 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.24 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.19 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.07 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.95 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.26 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.42 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.05 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.12 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.80 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.94 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR1213692 | leaf | wt | 1.08 | MC |
| SRR1213693 | leaf | wt | 1.52 | MC |
| SRR5856927 | leaf | control | 0.24 | MC |
| SRR5856928 | leaf | control | 0.31 | MC |
| SRR5856929 | leaf | control | 0.27 | MC |
| SRR5856931 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.26 | MC |
| SRR8582888 | panicle | AM | 0.32 | MC |
| SRR8582890 | panicle | AM | 0.45 | MC |
| SRR8582893 | panicle | PM | 0.32 | MC |
| SRR4947496 | root | control | 4.07 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR1633182 | panicle | WT | 5.15 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213694 | root | wt | 2.06 | MC |
| SRR1213695 | root | wt | 1.51 | MC |
| SRR4947480 | root | control | 4.49 | MC |
| SRR4947484 | root | Al | 2.67 | MC |
| SRR4947485 | root | Al | 2.24 | MC |
| SRR4947488 | root | control | 2.52 | MC |
| SRR4947489 | root | control | 1.95 | MC |
| SRR4947491 | root | Al | 4.00 | MC |
| SRR4947492 | root | Al | 1.86 | MC |
| SRR4947497 | root | control | 4.84 | MC |
| SRR4947498 | root | Al | 1.63 | MC |
| SRR4947500 | root | Al | 1.55 | MC |
| SRR4947501 | root | Al | 1.39 | MC |
| SRR4947504 | root | control | 4.17 | MC |
| SRR4947505 | root | control | 2.84 | MC |
| SRR4947506 | root | Al | 4.04 | MC |
| SRR4947507 | root | Al | 2.53 | MC |
| SRR4947508 | root | Al | 0.76 | MC |
| SRR4947509 | root | Al | 0.65 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.76 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.28 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.01 | MC |
| SRR6502094 | root | control | 1.54 | MC |
| SRR6502095 | root | control | 0.50 | MC |
| SRR6502096 | root | control | 2.20 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.03 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.59 | MC |
| SRR6502107 | root | control | 0.26 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.43 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.32 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.93 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.58 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.20 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.94 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.12 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.05 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.82 | MC |
| SRR2154086 | seedling | wt | 0.58 | MC |
| SRR2154085 | seedling | wt | 0.68 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.81 | MC |
| SRR1944583 | seedling | no_treatment | 1.82 | MC |
| SRR358791 | seedling | wt | 3.84 | MC |
| SRR358792 | seedling | wt | 3.17 | MC |
| SRR358793 | seedling | wt | 5.13 | MC |
| SRR358794 | seedling | wt | 5.06 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.46 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.00 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.80 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.46 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.45 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.44 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.20 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.85 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.76 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.34 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.45 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.78 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.78 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.91 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.60 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.81 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.64 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.65 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.34 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.80 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.02 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.39 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.37 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.68 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.11 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.46 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.27 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.32 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.46 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.24 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.52 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.95 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.92 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.26 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.60 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.37 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.03 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.27 | MC |