| SRR4457249 | 2nd_leaf | DAH4 | 0.52 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.75 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.42 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.47 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.51 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.12 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.83 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.69 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.15 | MC |
| SRR5560728 | caryopsis | wild_type | 3.17 | MC |
| SRR5560729 | caryopsis | wild_type | 2.00 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR4947495 | root | control | 1.11 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.96 | MC |
| SRR7265402 | coleoptile | 2dA | 1.02 | MC |
| SRR7265403 | coleoptile | 2dN | 0.42 | MC |
| SRR7265404 | coleoptile | 2dN | 0.77 | MC |
| SRR7265405 | coleoptile | 2dN | 1.37 | MC |
| SRR7265410 | coleoptile | 3dN | 1.14 | MC |
| SRR7265411 | coleoptile | 3dN | 0.82 | MC |
| SRR7265412 | coleoptile | 4dA | 1.44 | MC |
| SRR7265414 | coleoptile | 4dA | 1.58 | MC |
| SRR7265416 | coleoptile | 4dN | 0.75 | MC |
| SRR7265417 | coleoptile | 4dN | 1.59 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.57 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.77 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.29 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.20 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.60 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.49 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.63 | MC |
| SRR7265389 | embryo | 12hA | 0.80 | MC |
| SRR7265390 | embryo | 12hA | 0.57 | MC |
| SRR7265391 | embryo | 12hN | 1.01 | MC |
| SRR7265392 | embryo | 12hN | 1.66 | MC |
| SRR7265393 | embryo | 12hN | 1.70 | MC |
| SRR7265396 | embryo | 24hA | 1.05 | MC |
| SRR7265397 | embryo | 24hN | 0.90 | MC |
| SRR7265399 | embryo | 24hN | 2.41 | MC |
| SRR2338866 | endosprem | control | 1.80 | MC |
| SRR2338867 | endosprem | control | 0.87 | MC |
| SRR2338869 | endosprem | high_temperature | 0.91 | MC |
| SRR976168 | flag_leaf | wild_type | 0.43 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.51 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.42 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.71 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.29 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.73 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.52 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.68 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.76 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.76 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.82 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.52 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.94 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.87 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR1213691 | flower | wt | 0.72 | MC |
| SRR8060836 | leaf | wild_type | 0.92 | MC |
| SRR8060837 | leaf | wild_type | 2.33 | MC |
| SRR8240824 | leaf | wild_type | 0.48 | MC |
| SRR8240825 | leaf | wild_type | 0.34 | MC |
| SRR8240826 | leaf | wild_type | 0.53 | MC |
| SRR8240820 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.80 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.74 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.25 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.01 | MC |
| SRR504365 | leaf | wt | 0.76 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.13 | MC |
| SRR6417968 | leaf | H2O_control | 0.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.73 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.50 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.36 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.89 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.86 | MC |
| SRR1213693 | leaf | wt | 0.66 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.49 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502100 | leaf | control | 0.48 | MC |
| SRR6502102 | leaf | control | 0.82 | MC |
| SRR5856927 | leaf | control | 2.33 | MC |
| SRR5856928 | leaf | control | 1.98 | MC |
| SRR5856930 | leaf | salt | 1.21 | MC |
| SRR5856931 | leaf | salt | 0.79 | MC |
| SRR5856932 | leaf | salt | 1.15 | MC |
| SRR5856933 | leaf | control | 1.07 | MC |
| SRR5856934 | leaf | control | 0.96 | MC |
| SRR5856935 | leaf | control | 1.21 | MC |
| SRR5856936 | leaf | salt | 0.92 | MC |
| SRR5856937 | leaf | salt | 1.45 | MC |
| SRR5856938 | leaf | salt | 0.58 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.42 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.42 | MC |
| SRR6168973 | leaf | none (control) | 1.76 | MC |
| SRR6168975 | leaf | none (control) | 1.70 | MC |
| SRR8582893 | panicle | PM | 0.66 | MC |
| SRR4947496 | root | control | 1.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.27 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.68 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.14 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110446 | panicle | Dusk | 0.88 | MC |
| SRR5110447 | panicle | Dusk | 0.37 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.45 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.49 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.50 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.56 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.01 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.94 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.88 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.77 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.93 | MC |
| SRR5126147 | root | "mock,1_day" | 0.67 | MC |
| SRR5126148 | root | "mock,1_day" | 0.31 | MC |
| SRR5126149 | root | "mock,1_day" | 0.90 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.15 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126157 | root | "mock,7_days" | 0.74 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.61 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126167 | root | "mock,14_days" | 0.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.55 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.86 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.87 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.88 | MC |
| SRR1213694 | root | wt | 0.47 | MC |
| SRR1213695 | root | wt | 0.44 | MC |
| SRR4947478 | root | control | 2.09 | MC |
| SRR4947479 | root | control | 1.63 | MC |
| SRR4947480 | root | control | 1.48 | MC |
| SRR4947481 | root | control | 1.92 | MC |
| SRR4947483 | root | Al | 0.44 | MC |
| SRR4947484 | root | Al | 1.12 | MC |
| SRR4947485 | root | Al | 2.31 | MC |
| SRR4947488 | root | control | 1.29 | MC |
| SRR4947497 | root | control | 1.04 | MC |
| SRR4947498 | root | Al | 0.83 | MC |
| SRR4947502 | root | control | 0.96 | MC |
| SRR4947503 | root | control | 0.86 | MC |
| SRR4947505 | root | control | 1.52 | MC |
| SRR4947506 | root | Al | 0.79 | MC |
| SRR4947509 | root | Al | 0.80 | MC |
| SRR6502108 | root | control | 0.46 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.37 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.43 | MC |
| SRR6441554 | seedling | wild_type | 0.35 | MC |
| SRR6441555 | seedling | wild_type | 0.27 | MC |
| SRR2154087 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.38 | MC |
| SRR3098742 | seedling | wt | 0.17 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.43 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.99 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.44 | MC |
| SRR1944583 | seedling | no_treatment | 0.51 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.34 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.15 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.12 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.75 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.82 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.52 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.67 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.57 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.34 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.74 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.01 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.71 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.68 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.14 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.71 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.96 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.45 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.54 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.53 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.10 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.10 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.61 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.50 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.62 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.10 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.19 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.14 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.94 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.42 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.89 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.14 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.04 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.33 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.53 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.86 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.20 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |