| SRR4457252 | 2nd_leaf | DAH12 | 0.23 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.23 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR4947495 | root | control | 1.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR7265400 | coleoptile | 2dA | 1.84 | MC |
| SRR7265401 | coleoptile | 2dA | 1.65 | MC |
| SRR7265402 | coleoptile | 2dA | 1.93 | MC |
| SRR7265403 | coleoptile | 2dN | 1.22 | MC |
| SRR7265404 | coleoptile | 2dN | 0.56 | MC |
| SRR7265405 | coleoptile | 2dN | 0.85 | MC |
| SRR7265406 | coleoptile | 3dA | 2.19 | MC |
| SRR7265407 | coleoptile | 3dA | 2.42 | MC |
| SRR7265408 | coleoptile | 3dA | 1.86 | MC |
| SRR7265409 | coleoptile | 3dN | 1.07 | MC |
| SRR7265410 | coleoptile | 3dN | 0.57 | MC |
| SRR7265411 | coleoptile | 3dN | 0.73 | MC |
| SRR7265412 | coleoptile | 4dA | 2.47 | MC |
| SRR7265413 | coleoptile | 4dA | 4.52 | MC |
| SRR7265414 | coleoptile | 4dA | 3.21 | MC |
| SRR7265415 | coleoptile | 4dN | 0.69 | MC |
| SRR7265416 | coleoptile | 4dN | 0.70 | MC |
| SRR7265417 | coleoptile | 4dN | 0.83 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.10 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR7265384 | embryo | 3hA | 0.36 | MC |
| SRR7265388 | embryo | 12hA | 1.29 | MC |
| SRR7265389 | embryo | 12hA | 0.96 | MC |
| SRR7265390 | embryo | 12hA | 1.26 | MC |
| SRR7265394 | embryo | 24hA | 1.80 | MC |
| SRR7265395 | embryo | 24hA | 1.62 | MC |
| SRR7265396 | embryo | 24hA | 0.92 | MC |
| SRR7265397 | embryo | 24hN | 1.05 | MC |
| SRR7265399 | embryo | 24hN | 0.42 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.37 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.69 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.14 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.51 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.46 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.37 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.10 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.84 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.95 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.98 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.01 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.28 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.24 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.57 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.67 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.01 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.74 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.32 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.10 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.32 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.81 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.79 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.10 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.13 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.36 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.67 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.00 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.46 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.06 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.31 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.32 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.66 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.81 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.38 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.59 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.12 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.63 | MC |
| SRR1761528 | leaf | drought | 2.26 | MC |
| SRR1761529 | leaf | drought | 0.59 | MC |
| SRR504365 | leaf | wt | 0.23 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.44 | MC |
| SRR6417968 | leaf | H2O_control | 0.42 | MC |
| SRR6417969 | leaf | H2O_control | 0.96 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.37 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.30 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.34 | MC |
| SRR1213692 | leaf | wt | 0.30 | MC |
| SRR1213693 | leaf | wt | 1.38 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.44 | MC |
| SRR6502089 | leaf | control | 0.34 | MC |
| SRR5856927 | leaf | control | 0.93 | MC |
| SRR5856928 | leaf | control | 1.31 | MC |
| SRR5856929 | leaf | control | 1.30 | MC |
| SRR5856930 | leaf | salt | 0.65 | MC |
| SRR5856931 | leaf | salt | 0.70 | MC |
| SRR5856932 | leaf | salt | 0.76 | MC |
| SRR5856933 | leaf | control | 1.02 | MC |
| SRR5856934 | leaf | control | 1.69 | MC |
| SRR5856935 | leaf | control | 1.15 | MC |
| SRR5856936 | leaf | salt | 0.97 | MC |
| SRR5856937 | leaf | salt | 0.89 | MC |
| SRR5856938 | leaf | salt | 0.86 | MC |
| SRR5110431 | panicle | Dawn | 0.36 | MC |
| SRR4947496 | root | control | 0.85 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.47 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.56 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.99 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.90 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.62 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.92 | MC |
| SRR5110446 | panicle | Dusk | 0.37 | MC |
| SRR5110447 | panicle | Dusk | 1.05 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.73 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.38 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.68 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.54 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.37 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.46 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.60 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR1633182 | panicle | WT | 1.26 | MC |
| SRR1633185 | panicle | WT | 1.53 | MC |
| SRR5126147 | root | "mock,1_day" | 0.99 | MC |
| SRR5126148 | root | "mock,1_day" | 1.21 | MC |
| SRR5126149 | root | "mock,1_day" | 3.69 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.45 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.66 | MC |
| SRR5126153 | root | "mock,7_days" | 1.11 | MC |
| SRR5126155 | root | "mock,7_days" | 1.87 | MC |
| SRR5126157 | root | "mock,7_days" | 2.46 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.96 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.64 | MC |
| SRR5126165 | root | "mock,14_days" | 2.49 | MC |
| SRR5126167 | root | "mock,14_days" | 1.41 | MC |
| SRR5126169 | root | "mock,14_days" | 3.20 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.97 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.15 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.89 | MC |
| SRR1213695 | root | wt | 1.18 | MC |
| SRR4947478 | root | control | 1.29 | MC |
| SRR4947479 | root | control | 1.74 | MC |
| SRR4947480 | root | control | 1.90 | MC |
| SRR4947481 | root | control | 4.08 | MC |
| SRR4947482 | root | Al | 2.08 | MC |
| SRR4947483 | root | Al | 3.00 | MC |
| SRR4947484 | root | Al | 1.00 | MC |
| SRR4947485 | root | Al | 1.84 | MC |
| SRR4947487 | root | control | 1.69 | MC |
| SRR4947488 | root | control | 1.33 | MC |
| SRR4947489 | root | control | 1.24 | MC |
| SRR4947490 | root | Al | 0.63 | MC |
| SRR4947491 | root | Al | 1.09 | MC |
| SRR4947492 | root | Al | 0.72 | MC |
| SRR4947493 | root | Al | 1.17 | MC |
| SRR4947494 | root | control | 1.65 | MC |
| SRR4947498 | root | Al | 1.48 | MC |
| SRR4947499 | root | Al | 0.98 | MC |
| SRR4947500 | root | Al | 0.54 | MC |
| SRR4947502 | root | control | 1.05 | MC |
| SRR4947503 | root | control | 3.53 | MC |
| SRR4947504 | root | control | 2.57 | MC |
| SRR4947505 | root | control | 1.00 | MC |
| SRR4947506 | root | Al | 2.08 | MC |
| SRR4947507 | root | Al | 0.83 | MC |
| SRR4947508 | root | Al | 1.02 | MC |
| SRR4947509 | root | Al | 1.81 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.90 | MC |
| SRR6502094 | root | control | 1.16 | MC |
| SRR6502095 | root | control | 1.82 | MC |
| SRR6502096 | root | control | 1.60 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.18 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.93 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.71 | MC |
| SRR6502106 | root | control | 1.94 | MC |
| SRR6502107 | root | control | 1.56 | MC |
| SRR6502108 | root | control | 2.20 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.85 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.58 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.70 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.25 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.94 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.20 | MC |
| SRR6441554 | seedling | wild_type | 0.25 | MC |
| SRR6441555 | seedling | wild_type | 0.42 | MC |
| SRR2154083 | seedling | wt | 0.53 | MC |
| SRR2154087 | seedling | wt | 0.59 | MC |
| SRR3098741 | seedling | wt | 0.53 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.96 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.79 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.53 | MC |
| SRR1944583 | seedling | no_treatment | 0.42 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.35 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.77 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.52 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.33 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.54 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.17 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.22 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.33 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.23 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.28 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.70 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.52 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.60 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.64 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.65 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |