| SRR4457254 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.52 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.75 | MC |
| SRR3745125 | anther | wt | 3.90 | MC |
| SRR3745126 | anther | wt | 4.96 | MC |
| SRR3745127 | anther | wt | 4.47 | MC |
| SRR5560727 | caryopsis | wild_type | 0.28 | MC |
| SRR7265400 | coleoptile | 2dA | 0.57 | MC |
| SRR7265402 | coleoptile | 2dA | 0.44 | MC |
| SRR7265403 | coleoptile | 2dN | 0.62 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265405 | coleoptile | 2dN | 0.77 | MC |
| SRR7265408 | coleoptile | 3dA | 2.66 | MC |
| SRR7265409 | coleoptile | 3dN | 1.30 | MC |
| SRR7265410 | coleoptile | 3dN | 0.84 | MC |
| SRR7265411 | coleoptile | 3dN | 1.87 | MC |
| SRR7265413 | coleoptile | 4dA | 0.97 | MC |
| SRR7265414 | coleoptile | 4dA | 0.55 | MC |
| SRR7265415 | coleoptile | 4dN | 1.07 | MC |
| SRR7265416 | coleoptile | 4dN | 1.20 | MC |
| SRR7265417 | coleoptile | 4dN | 1.23 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.56 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.72 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.91 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.21 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.83 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.17 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.29 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.43 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.53 | MC |
| SRR7265376 | embryo | 1hA | 0.51 | MC |
| SRR7265377 | embryo | 1hA | 1.07 | MC |
| SRR7265378 | embryo | 1hA | 1.30 | MC |
| SRR7265379 | embryo | 1hN | 0.62 | MC |
| SRR7265380 | embryo | 1hN | 1.33 | MC |
| SRR7265381 | embryo | 1hN | 0.87 | MC |
| SRR7265382 | embryo | 3hA | 0.88 | MC |
| SRR7265383 | embryo | 3hA | 0.47 | MC |
| SRR7265384 | embryo | 3hA | 0.71 | MC |
| SRR7265385 | embryo | 3hN | 0.64 | MC |
| SRR7265386 | embryo | 3hN | 2.75 | MC |
| SRR7265387 | embryo | 3hN | 0.67 | MC |
| SRR7265388 | embryo | 12hA | 2.16 | MC |
| SRR7265389 | embryo | 12hA | 0.67 | MC |
| SRR7265390 | embryo | 12hA | 0.91 | MC |
| SRR7265391 | embryo | 12hN | 0.46 | MC |
| SRR7265392 | embryo | 12hN | 1.91 | MC |
| SRR7265393 | embryo | 12hN | 0.53 | MC |
| SRR7265394 | embryo | 24hA | 0.68 | MC |
| SRR7265395 | embryo | 24hA | 0.85 | MC |
| SRR7265397 | embryo | 24hN | 1.66 | MC |
| SRR7265398 | embryo | 24hN | 1.03 | MC |
| SRR7265399 | embryo | 24hN | 0.44 | MC |
| SRR2338867 | endosprem | control | 0.46 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.31 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR1213691 | flower | wt | 0.37 | MC |
| SRR8060835 | leaf | wild_type | 1.29 | MC |
| SRR8060836 | leaf | wild_type | 0.89 | MC |
| SRR8060837 | leaf | wild_type | 0.54 | MC |
| SRR8240824 | leaf | wild_type | 0.58 | MC |
| SRR8240826 | leaf | wild_type | 0.45 | MC |
| SRR8240818 | leaf | wild_type | 0.28 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.00 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.20 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.52 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.73 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.27 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.82 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.27 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.59 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.36 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.39 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.49 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.34 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.30 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.91 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.93 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.97 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.50 | MC |
| SRR1213692 | leaf | wt | 0.42 | MC |
| SRR1213693 | leaf | wt | 0.33 | MC |
| SRR5856930 | leaf | salt | 0.78 | MC |
| SRR5856932 | leaf | salt | 0.18 | MC |
| SRR5856934 | leaf | control | 1.26 | MC |
| SRR6168973 | leaf | none (control) | 1.54 | MC |
| SRR6168974 | leaf | none (control) | 1.35 | MC |
| SRR6168975 | leaf | none (control) | 0.43 | MC |
| SRR6168979 | leaf | none (control) | 0.33 | MC |
| SRR6168981 | leaf | none (control) | 2.19 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR8582890 | panicle | AM | 0.24 | MC |
| SRR8582891 | panicle | PM | 0.44 | MC |
| SRR8582893 | panicle | PM | 0.30 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.16 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.38 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.61 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.42 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.14 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.27 | MC |
| SRR5126148 | root | "mock,1_day" | 0.85 | MC |
| SRR5126149 | root | "mock,1_day" | 0.83 | MC |
| SRR5126153 | root | "mock,7_days" | 1.32 | MC |
| SRR5126157 | root | "mock,7_days" | 0.64 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.88 | MC |
| SRR5126169 | root | "mock,14_days" | 2.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR1213695 | root | wt | 0.22 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.69 | MC |
| SRR6502094 | root | control | 1.07 | MC |
| SRR6502096 | root | control | 0.98 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.10 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.58 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.25 | MC |
| SRR6441555 | seedling | wild_type | 0.27 | MC |
| SRR2154084 | seedling | wt | 0.45 | MC |
| SRR3098741 | seedling | wt | 0.27 | MC |
| SRR3098743 | seedling | wt | 0.87 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.39 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.46 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.03 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.77 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.85 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.17 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.68 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.93 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.06 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.30 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.06 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.30 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.67 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.80 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.12 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.90 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.24 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.92 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.44 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.31 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.93 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.79 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.31 | MC |