| SRR4457249 | 2nd_leaf | DAH4 | 3.44 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.21 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.04 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.42 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.31 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.91 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.62 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.18 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.33 | MC |
| SRR5560727 | caryopsis | wild_type | 2.51 | MC |
| SRR5560728 | caryopsis | wild_type | 3.13 | MC |
| SRR5560729 | caryopsis | wild_type | 2.04 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.84 | MC |
| SRR4947495 | root | control | 1.17 | MC |
| SRR7265402 | coleoptile | 2dA | 2.47 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.92 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.17 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.10 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.77 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.40 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.44 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.63 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.57 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.52 | MC |
| SRR7265376 | embryo | 1hA | 0.97 | MC |
| SRR7265378 | embryo | 1hA | 0.85 | MC |
| SRR7265381 | embryo | 1hN | 0.96 | MC |
| SRR7265383 | embryo | 3hA | 3.73 | MC |
| SRR7265384 | embryo | 3hA | 3.15 | MC |
| SRR7265386 | embryo | 3hN | 0.82 | MC |
| SRR2338867 | endosprem | control | 1.76 | MC |
| SRR2338869 | endosprem | high_temperature | 1.43 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.74 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.09 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.81 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.26 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.59 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.31 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.89 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.84 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.23 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.18 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.54 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.63 | MC |
| SRR1213691 | flower | wt | 1.24 | MC |
| SRR8060835 | leaf | wild_type | 2.34 | MC |
| SRR8240819 | leaf | wild_type | 1.83 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.43 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.78 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.64 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.39 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.43 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.57 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.67 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.62 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.02 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.27 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.73 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.43 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.22 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.71 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.95 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.26 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.78 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.56 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.02 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.51 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.62 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.08 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.72 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.39 | MC |
| SRR6417967 | leaf | H2O_control | 2.72 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.91 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.31 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.96 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.92 | MC |
| SRR1213692 | leaf | wt | 2.50 | MC |
| SRR1213693 | leaf | wt | 1.50 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.63 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.68 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.03 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.67 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 7.25 | MC |
| SRR6168975 | leaf | none (control) | 3.75 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.61 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.92 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.68 | MC |
| SRR8582891 | panicle | PM | 3.28 | MC |
| SRR8582892 | panicle | PM | 5.37 | MC |
| SRR8582893 | panicle | PM | 4.29 | MC |
| SRR5110432 | panicle | Dawn | 3.33 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.63 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.77 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.16 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.68 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.40 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.87 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.10 | MC |
| SRR5110445 | panicle | Dusk | 4.03 | MC |
| SRR5110446 | panicle | Dusk | 1.85 | MC |
| SRR5110447 | panicle | Dusk | 3.30 | MC |
| SRR5110448 | panicle | Dusk | 4.28 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.88 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.90 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.12 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.93 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.91 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.15 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.69 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.40 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.31 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.86 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.53 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.13 | MC |
| SRR5126147 | root | "mock,1_day" | 2.07 | MC |
| SRR5126148 | root | "mock,1_day" | 2.68 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.01 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.97 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 0.98 | MC |
| SRR4947485 | root | Al | 2.74 | MC |
| SRR4947488 | root | control | 1.14 | MC |
| SRR4947494 | root | control | 1.99 | MC |
| SRR4947497 | root | control | 2.53 | MC |
| SRR4947499 | root | Al | 0.92 | MC |
| SRR4947500 | root | Al | 1.16 | MC |
| SRR4947501 | root | Al | 1.54 | MC |
| SRR4947508 | root | Al | 1.01 | MC |
| SRR4947509 | root | Al | 1.30 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.07 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.53 | MC |
| SRR2154082 | seedling | wt | 2.00 | MC |
| SRR2154085 | seedling | wt | 3.99 | MC |
| SRR1944583 | seedling | no_treatment | 3.39 | MC |
| SRR358791 | seedling | wt | 5.22 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.90 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.75 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.07 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.60 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.25 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.72 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.64 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.34 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.86 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.57 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.46 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.32 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.29 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.58 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.53 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.67 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.66 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.43 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.71 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.67 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.03 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.58 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.25 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.99 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.10 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.92 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.54 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.91 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.73 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.43 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.22 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.33 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.45 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.72 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.54 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.97 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.57 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.37 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.07 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.03 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.64 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.48 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.19 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.25 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.01 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.71 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.55 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.40 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.81 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.11 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |