| SRR5560728 | caryopsis | wild_type | 3.42 | MC |
| SRR5560729 | caryopsis | wild_type | 4.53 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.38 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.05 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.09 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.85 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.21 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.40 | MC |
| SRR8060835 | leaf | wild_type | 0.64 | MC |
| SRR8060836 | leaf | wild_type | 3.00 | MC |
| SRR8060837 | leaf | wild_type | 0.67 | MC |
| SRR8240825 | leaf | wild_type | 1.23 | MC |
| SRR8240819 | leaf | wild_type | 1.14 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.17 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.91 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.83 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.91 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.83 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.05 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.08 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.54 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.47 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.55 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.44 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.15 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.79 | MC |
| SRR6417969 | leaf | H2O_control | 0.87 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.79 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.08 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.25 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.82 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.99 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.99 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.37 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.06 | MC |
| SRR5856927 | leaf | control | 1.33 | MC |
| SRR5856928 | leaf | control | 1.71 | MC |
| SRR5856931 | leaf | salt | 0.95 | MC |
| SRR5856934 | leaf | control | 1.91 | MC |
| SRR5856936 | leaf | salt | 1.59 | MC |
| SRR5856937 | leaf | salt | 1.64 | MC |
| SRR6168973 | leaf | none (control) | 0.84 | MC |
| SRR6168975 | leaf | none (control) | 1.05 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR6168981 | leaf | none (control) | 0.55 | MC |
| SRR8582893 | panicle | PM | 1.59 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.21 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.02 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.66 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.92 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.06 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.58 | MC |
| SRR5126149 | root | "mock,1_day" | 4.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.65 | MC |
| SRR5126153 | root | "mock,7_days" | 2.67 | MC |
| SRR5126155 | root | "mock,7_days" | 4.03 | MC |
| SRR5126157 | root | "mock,7_days" | 4.17 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.65 | MC |
| SRR5126167 | root | "mock,14_days" | 2.62 | MC |
| SRR5126169 | root | "mock,14_days" | 4.14 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.96 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.84 | MC |
| SRR4947501 | root | Al | 1.99 | MC |
| SRR4947504 | root | control | 3.95 | MC |
| SRR4947505 | root | control | 2.25 | MC |
| SRR6441554 | seedling | wild_type | 0.58 | MC |
| SRR6441555 | seedling | wild_type | 0.71 | MC |
| SRR2154086 | seedling | wt | 2.30 | MC |
| SRR2154084 | seedling | wt | 0.33 | MC |
| SRR2154085 | seedling | wt | 0.69 | MC |
| SRR2154087 | seedling | wt | 0.81 | MC |
| SRR3098741 | seedling | wt | 1.13 | MC |
| SRR3098742 | seedling | wt | 1.02 | MC |
| SRR3098743 | seedling | wt | 0.93 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.51 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.21 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.93 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.68 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.68 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.04 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.38 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.06 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.35 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.66 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.51 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.75 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.98 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.50 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.83 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.24 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.48 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.50 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.15 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.62 | MC |