| SRR4457249 | 2nd_leaf | DAH4 | 3.91 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.64 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.75 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.51 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.83 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.65 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.39 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.65 | MC |
| SRR3745125 | anther | wt | 2.15 | MC |
| SRR3745126 | anther | wt | 1.41 | MC |
| SRR3745127 | anther | wt | 1.23 | MC |
| SRR358795 | callus | wt | 7.95 | MC |
| SRR358796 | callus | wt | 8.98 | MC |
| SRR358797 | callus | wt | 8.53 | MC |
| SRR5560727 | caryopsis | wild_type | 3.04 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.57 | MC |
| SRR4947495 | root | control | 2.20 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.52 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.54 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.46 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.05 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.72 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.34 | MC |
| SRR2338867 | endosprem | control | 1.61 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.34 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.22 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.59 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.07 | MC |
| SRR8240824 | leaf | wild_type | 0.76 | MC |
| SRR8240825 | leaf | wild_type | 0.33 | MC |
| SRR8240826 | leaf | wild_type | 0.85 | MC |
| SRR8240820 | leaf | wild_type | 0.87 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.04 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.46 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.19 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.84 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.19 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.84 | MC |
| SRR1761530 | leaf | control | 5.19 | MC |
| SRR1761531 | leaf | control | 4.84 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.60 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.80 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.32 | MC |
| SRR6417967 | leaf | H2O_control | 1.75 | MC |
| SRR6417968 | leaf | H2O_control | 2.31 | MC |
| SRR6417969 | leaf | H2O_control | 1.24 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.00 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.94 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.58 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.55 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.13 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.95 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.07 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.76 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.93 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.44 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.51 | MC |
| SRR6502088 | leaf | control | 3.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.55 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.63 | MC |
| SRR6502100 | leaf | control | 3.54 | MC |
| SRR6502101 | leaf | control | 4.10 | MC |
| SRR6502102 | leaf | control | 3.80 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.08 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.41 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.00 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.97 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.55 | MC |
| SRR6168973 | leaf | none (control) | 1.84 | MC |
| SRR6168974 | leaf | none (control) | 2.43 | MC |
| SRR6168975 | leaf | none (control) | 1.73 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.28 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.71 | MC |
| SRR8582891 | panicle | PM | 1.84 | MC |
| SRR8582892 | panicle | PM | 3.85 | MC |
| SRR8582893 | panicle | PM | 1.45 | MC |
| SRR4947496 | root | control | 1.61 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.29 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.27 | MC |
| SRR5110446 | panicle | Dusk | 3.70 | MC |
| SRR5110447 | panicle | Dusk | 4.20 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.01 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.13 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.26 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.29 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.97 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.32 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.77 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.75 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.40 | MC |
| SRR5126155 | root | "mock,7_days" | 4.40 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.20 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.67 | MC |
| SRR1213694 | root | wt | 1.96 | MC |
| SRR4947478 | root | control | 1.67 | MC |
| SRR4947479 | root | control | 1.43 | MC |
| SRR4947480 | root | control | 2.14 | MC |
| SRR4947481 | root | control | 4.86 | MC |
| SRR4947482 | root | Al | 1.64 | MC |
| SRR4947483 | root | Al | 2.68 | MC |
| SRR4947484 | root | Al | 2.63 | MC |
| SRR4947485 | root | Al | 1.90 | MC |
| SRR4947487 | root | control | 1.43 | MC |
| SRR4947488 | root | control | 1.99 | MC |
| SRR4947489 | root | control | 2.04 | MC |
| SRR4947490 | root | Al | 3.68 | MC |
| SRR4947491 | root | Al | 3.99 | MC |
| SRR4947492 | root | Al | 3.05 | MC |
| SRR4947493 | root | Al | 1.70 | MC |
| SRR4947494 | root | control | 1.66 | MC |
| SRR4947497 | root | control | 2.23 | MC |
| SRR4947498 | root | Al | 4.39 | MC |
| SRR4947499 | root | Al | 2.59 | MC |
| SRR4947500 | root | Al | 3.03 | MC |
| SRR4947501 | root | Al | 3.06 | MC |
| SRR4947502 | root | control | 2.40 | MC |
| SRR4947503 | root | control | 2.46 | MC |
| SRR4947504 | root | control | 2.36 | MC |
| SRR4947505 | root | control | 2.95 | MC |
| SRR4947506 | root | Al | 2.93 | MC |
| SRR4947507 | root | Al | 3.64 | MC |
| SRR4947508 | root | Al | 2.46 | MC |
| SRR4947509 | root | Al | 2.50 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.32 | MC |
| SRR6502094 | root | control | 4.36 | MC |
| SRR6502095 | root | control | 4.98 | MC |
| SRR6502096 | root | control | 3.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.95 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.16 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.21 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.94 | MC |
| SRR6441554 | seedling | wild_type | 1.89 | MC |
| SRR6441555 | seedling | wild_type | 2.00 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.54 | MC |
| SRR1944583 | seedling | no_treatment | 3.34 | MC |
| SRR358793 | seedling | wt | 5.48 | MC |
| SRR358794 | seedling | wt | 5.42 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.71 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.57 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.08 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.44 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.66 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.49 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.39 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.32 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.17 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.61 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.38 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.85 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.44 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.45 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.16 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.29 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.09 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.72 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.64 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.12 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.40 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.91 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.55 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.97 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.94 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.20 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.32 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.94 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.05 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.52 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.00 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.85 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.32 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.31 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.06 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.46 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.70 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.45 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.36 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.14 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.02 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.15 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.58 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.90 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.97 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.26 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.13 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.36 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.72 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.71 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.96 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.07 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.31 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.74 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.85 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.14 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.55 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.13 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.80 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.31 | MC |