| SRR4457262 | 2nd_leaf | DAH36 | 1.27 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.96 | MC |
| SRR7265416 | coleoptile | 4dN | 0.55 | MC |
| SRR7265417 | coleoptile | 4dN | 0.65 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.43 | MC |
| SRR7265392 | embryo | 12hN | 1.23 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.65 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.06 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.42 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.60 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.30 | MC |
| SRR1213691 | flower | wt | 0.52 | MC |
| SRR8240820 | leaf | wild_type | 0.24 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.99 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.47 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.15 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.39 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.30 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.58 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.87 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.59 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.32 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.63 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.73 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.44 | MC |
| SRR1761529 | leaf | drought | 0.44 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.40 | MC |
| SRR6417967 | leaf | H2O_control | 0.69 | MC |
| SRR6417969 | leaf | H2O_control | 1.22 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.03 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.83 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.45 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.75 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.28 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.82 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.82 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR1213693 | leaf | wt | 0.92 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6502089 | leaf | control | 0.62 | MC |
| SRR6502100 | leaf | control | 0.85 | MC |
| SRR6502101 | leaf | control | 0.75 | MC |
| SRR6502102 | leaf | control | 0.92 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.17 | MC |
| SRR6168973 | leaf | none (control) | 0.70 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR8582888 | panicle | AM | 0.78 | MC |
| SRR8582889 | panicle | AM | 0.58 | MC |
| SRR8582890 | panicle | AM | 1.01 | MC |
| SRR8582892 | panicle | PM | 1.76 | MC |
| SRR8582893 | panicle | PM | 0.35 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.23 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.29 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR1213695 | root | wt | 0.51 | MC |
| SRR4947484 | root | Al | 0.53 | MC |
| SRR4947488 | root | control | 0.51 | MC |
| SRR4947489 | root | control | 2.11 | MC |
| SRR4947501 | root | Al | 0.96 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.59 | MC |
| SRR2154086 | seedling | wt | 0.49 | MC |
| SRR2154087 | seedling | wt | 1.66 | MC |
| SRR3098742 | seedling | wt | 0.45 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.27 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.29 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.04 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.39 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.69 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.25 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.37 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.33 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.17 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.91 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.65 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.37 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.14 | MC |