| SRR5560727 | caryopsis | wild_type | 0.45 | MC |
| SRR5560728 | caryopsis | wild_type | 0.40 | MC |
| SRR5560729 | caryopsis | wild_type | 0.34 | MC |
| SRR4947495 | root | control | 1.12 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.80 | MC |
| SRR7265401 | coleoptile | 2dA | 0.27 | MC |
| SRR7265402 | coleoptile | 2dA | 0.61 | MC |
| SRR7265406 | coleoptile | 3dA | 0.71 | MC |
| SRR7265407 | coleoptile | 3dA | 0.46 | MC |
| SRR7265409 | coleoptile | 3dN | 0.41 | MC |
| SRR7265410 | coleoptile | 3dN | 0.80 | MC |
| SRR7265411 | coleoptile | 3dN | 0.74 | MC |
| SRR7265414 | coleoptile | 4dA | 0.51 | MC |
| SRR7265416 | coleoptile | 4dN | 0.86 | MC |
| SRR7265417 | coleoptile | 4dN | 1.26 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.91 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.06 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.91 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.08 | MC |
| SRR7265388 | embryo | 12hA | 1.10 | MC |
| SRR7265389 | embryo | 12hA | 0.82 | MC |
| SRR7265390 | embryo | 12hA | 0.82 | MC |
| SRR7265394 | embryo | 24hA | 0.76 | MC |
| SRR7265395 | embryo | 24hA | 0.56 | MC |
| SRR7265396 | embryo | 24hA | 0.58 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.17 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR5856927 | leaf | control | 0.43 | MC |
| SRR5856929 | leaf | control | 0.52 | MC |
| SRR5856930 | leaf | salt | 0.37 | MC |
| SRR5856931 | leaf | salt | 0.21 | MC |
| SRR5856932 | leaf | salt | 0.44 | MC |
| SRR5856936 | leaf | salt | 0.38 | MC |
| SRR5856937 | leaf | salt | 0.32 | MC |
| SRR5856938 | leaf | salt | 0.43 | MC |
| SRR6168973 | leaf | none (control) | 1.66 | MC |
| SRR6168974 | leaf | none (control) | 0.52 | MC |
| SRR6168975 | leaf | none (control) | 0.91 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.89 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.38 | MC |
| SRR6168981 | leaf | none (control) | 0.28 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR8582888 | panicle | AM | 0.35 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582891 | panicle | PM | 1.10 | MC |
| SRR8582892 | panicle | PM | 0.69 | MC |
| SRR8582893 | panicle | PM | 1.37 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.37 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.74 | MC |
| SRR5126147 | root | "mock,1_day" | 2.24 | MC |
| SRR5126148 | root | "mock,1_day" | 1.23 | MC |
| SRR5126149 | root | "mock,1_day" | 0.81 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.84 | MC |
| SRR5126153 | root | "mock,7_days" | 1.85 | MC |
| SRR5126155 | root | "mock,7_days" | 1.66 | MC |
| SRR5126157 | root | "mock,7_days" | 4.27 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.51 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.03 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.86 | MC |
| SRR5126165 | root | "mock,14_days" | 0.78 | MC |
| SRR5126167 | root | "mock,14_days" | 0.56 | MC |
| SRR5126169 | root | "mock,14_days" | 1.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.05 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.54 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.57 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.64 | MC |
| SRR4947478 | root | control | 0.60 | MC |
| SRR4947479 | root | control | 0.80 | MC |
| SRR4947480 | root | control | 4.42 | MC |
| SRR4947481 | root | control | 3.79 | MC |
| SRR4947484 | root | Al | 3.95 | MC |
| SRR4947485 | root | Al | 3.54 | MC |
| SRR4947487 | root | control | 1.22 | MC |
| SRR4947489 | root | control | 4.98 | MC |
| SRR4947492 | root | Al | 3.63 | MC |
| SRR4947493 | root | Al | 4.83 | MC |
| SRR4947494 | root | control | 1.03 | MC |
| SRR4947497 | root | control | 4.48 | MC |
| SRR4947498 | root | Al | 0.49 | MC |
| SRR4947500 | root | Al | 2.05 | MC |
| SRR4947501 | root | Al | 2.89 | MC |
| SRR4947503 | root | control | 1.03 | MC |
| SRR4947505 | root | control | 4.65 | MC |
| SRR4947506 | root | Al | 0.51 | MC |
| SRR4947508 | root | Al | 4.92 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.70 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.07 | MC |
| SRR6502094 | root | control | 1.31 | MC |
| SRR6502095 | root | control | 1.75 | MC |
| SRR6502096 | root | control | 0.64 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.39 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502106 | root | control | 0.93 | MC |
| SRR6502107 | root | control | 0.70 | MC |
| SRR6502108 | root | control | 1.06 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.57 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.90 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.48 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.78 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.34 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.68 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.81 | MC |
| SRR2154086 | seedling | wt | 0.65 | MC |
| SRR2154087 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.16 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.48 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.59 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.58 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.76 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.84 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.72 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.87 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.03 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.95 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.39 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.11 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.08 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.84 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.73 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.69 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.92 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.46 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.75 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.74 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.35 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.07 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.83 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.17 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.63 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.28 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.73 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.20 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.72 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.30 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.26 | MC |