| SRR5560728 | caryopsis | wild_type | 3.77 | MC |
| SRR5560729 | caryopsis | wild_type | 1.30 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.95 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.34 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.62 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.01 | MC |
| SRR7265406 | coleoptile | 3dA | 2.65 | MC |
| SRR7265407 | coleoptile | 3dA | 2.63 | MC |
| SRR7265408 | coleoptile | 3dA | 1.44 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.51 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.28 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.19 | MC |
| SRR7265388 | embryo | 12hA | 0.95 | MC |
| SRR7265389 | embryo | 12hA | 0.55 | MC |
| SRR7265390 | embryo | 12hA | 0.55 | MC |
| SRR7265394 | embryo | 24hA | 0.71 | MC |
| SRR2338867 | endosprem | control | 0.69 | MC |
| SRR2338868 | endosprem | high_temperature | 0.51 | MC |
| SRR976168 | flag_leaf | wild_type | 0.83 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.68 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.75 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.79 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.73 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.87 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.15 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.22 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.26 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.19 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.71 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.55 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.79 | MC |
| SRR8240824 | leaf | wild_type | 2.05 | MC |
| SRR8240825 | leaf | wild_type | 0.96 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.84 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.24 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.05 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.39 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.36 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.84 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.92 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.91 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.67 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.04 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.94 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.57 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.81 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.80 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.22 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.95 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.58 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.23 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.15 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.27 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.78 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.03 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.95 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.21 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.91 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.21 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.88 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.71 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.62 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.42 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.62 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.42 | MC |
| SRR1761529 | leaf | drought | 3.62 | MC |
| SRR1761531 | leaf | control | 0.42 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.61 | MC |
| SRR6417968 | leaf | H2O_control | 0.67 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.20 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.77 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.12 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.18 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.28 | MC |
| SRR1213693 | leaf | wt | 3.26 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.39 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.69 | MC |
| SRR6502088 | leaf | control | 1.28 | MC |
| SRR6502089 | leaf | control | 2.34 | MC |
| SRR6502090 | leaf | control | 0.82 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.31 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.62 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.18 | MC |
| SRR6502100 | leaf | control | 2.06 | MC |
| SRR6502101 | leaf | control | 1.06 | MC |
| SRR6502102 | leaf | control | 1.74 | MC |
| SRR6168973 | leaf | none (control) | 2.84 | MC |
| SRR6168974 | leaf | none (control) | 0.91 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.51 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168979 | leaf | none (control) | 1.59 | MC |
| SRR6168980 | leaf | none (control) | 0.63 | MC |
| SRR6168981 | leaf | none (control) | 1.08 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.63 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.96 | MC |
| SRR8582888 | panicle | AM | 0.38 | MC |
| SRR8582889 | panicle | AM | 0.17 | MC |
| SRR8582890 | panicle | AM | 0.24 | MC |
| SRR8582891 | panicle | PM | 0.87 | MC |
| SRR8582893 | panicle | PM | 0.78 | MC |
| SRR5110429 | panicle | Dawn | 0.97 | MC |
| SRR5110430 | panicle | Dawn | 0.58 | MC |
| SRR5110431 | panicle | Dawn | 1.51 | MC |
| SRR5110432 | panicle | Dawn | 0.83 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.27 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.21 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.77 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.28 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.41 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.53 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.70 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.81 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.46 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.30 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.68 | MC |
| SRR1213695 | root | wt | 2.82 | MC |
| SRR4947491 | root | Al | 4.94 | MC |
| SRR6502094 | root | control | 5.11 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.37 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.70 | MC |
| SRR6441554 | seedling | wild_type | 3.10 | MC |
| SRR3098742 | seedling | wt | 0.91 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.72 | MC |
| SRR1944583 | seedling | no_treatment | 1.69 | MC |
| SRR358791 | seedling | wt | 2.69 | MC |
| SRR358792 | seedling | wt | 1.66 | MC |
| SRR358793 | seedling | wt | 0.72 | MC |
| SRR358794 | seedling | wt | 0.61 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.71 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.92 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.97 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.61 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.85 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.65 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.72 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.27 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.59 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.35 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.92 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.23 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.79 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.92 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.91 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.28 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.12 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.51 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.45 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.03 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.28 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.70 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.52 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.61 | MC |