| SRR4457250 | 2nd_leaf | DAH4 | 3.50 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.63 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.29 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.00 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.63 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.65 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.93 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.02 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.06 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.70 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.42 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.32 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.72 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.95 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.20 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.05 | MC |
| SRR358795 | callus | wt | 3.22 | MC |
| SRR6320473 | carpel | wt | 6.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.88 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.31 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.20 | MC |
| SRR7265400 | coleoptile | 2dA | 0.51 | MC |
| SRR7265405 | coleoptile | 2dN | 0.98 | MC |
| SRR7265409 | coleoptile | 3dN | 0.74 | MC |
| SRR7265410 | coleoptile | 3dN | 0.92 | MC |
| SRR7265417 | coleoptile | 4dN | 0.65 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.17 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.93 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.90 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.22 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.51 | MC |
| SRR7265377 | embryo | 1hA | 0.64 | MC |
| SRR7265378 | embryo | 1hA | 0.51 | MC |
| SRR7265381 | embryo | 1hN | 0.96 | MC |
| SRR7265382 | embryo | 3hA | 1.11 | MC |
| SRR7265384 | embryo | 3hA | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.97 | MC |
| SRR7265387 | embryo | 3hN | 0.79 | MC |
| SRR7265389 | embryo | 12hA | 0.67 | MC |
| SRR7265398 | embryo | 24hN | 0.86 | MC |
| SRR7265399 | embryo | 24hN | 0.68 | MC |
| SRR2338867 | endosprem | control | 0.48 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.63 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.63 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.78 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.91 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.06 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.50 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.49 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.65 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.74 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.54 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.67 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.23 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.93 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.48 | MC |
| SRR8060835 | leaf | wild_type | 2.54 | MC |
| SRR8240820 | leaf | wild_type | 1.68 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.67 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.74 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.57 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.52 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.44 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.04 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.01 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.23 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.22 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.43 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.50 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.24 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.67 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.87 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.65 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.48 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.48 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.61 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.56 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.27 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.95 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.36 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.96 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.35 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.41 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.91 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.35 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.41 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.91 | MC |
| SRR1761529 | leaf | drought | 2.35 | MC |
| SRR1761530 | leaf | control | 3.42 | MC |
| SRR1761531 | leaf | control | 3.91 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.83 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 3.17 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.06 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.45 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.05 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.53 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.79 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.12 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.61 | MC |
| SRR1213692 | leaf | wt | 4.34 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.69 | MC |
| SRR6502088 | leaf | control | 1.11 | MC |
| SRR6502089 | leaf | control | 4.30 | MC |
| SRR6502090 | leaf | control | 3.47 | MC |
| SRR5856929 | leaf | control | 1.94 | MC |
| SRR6168979 | leaf | none (control) | 0.24 | MC |
| SRR4947496 | root | control | 1.53 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.69 | MC |
| SRR5126148 | root | "mock,1_day" | 0.56 | MC |
| SRR5126149 | root | "mock,1_day" | 0.91 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126153 | root | "mock,7_days" | 1.19 | MC |
| SRR5126155 | root | "mock,7_days" | 1.08 | MC |
| SRR5126157 | root | "mock,7_days" | 2.60 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.41 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.03 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.23 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 2.66 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.96 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.37 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.26 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.53 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.71 | MC |
| SRR1213694 | root | wt | 0.45 | MC |
| SRR4947480 | root | control | 3.62 | MC |
| SRR4947484 | root | Al | 2.35 | MC |
| SRR4947485 | root | Al | 1.62 | MC |
| SRR4947488 | root | control | 4.88 | MC |
| SRR4947492 | root | Al | 1.98 | MC |
| SRR4947493 | root | Al | 3.13 | MC |
| SRR4947497 | root | control | 4.08 | MC |
| SRR4947500 | root | Al | 1.50 | MC |
| SRR4947501 | root | Al | 0.91 | MC |
| SRR4947504 | root | control | 3.89 | MC |
| SRR4947505 | root | control | 2.44 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.27 | MC |
| SRR6502095 | root | control | 0.46 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.67 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.42 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.63 | MC |
| SRR6502106 | root | control | 1.77 | MC |
| SRR6502107 | root | control | 0.97 | MC |
| SRR6502108 | root | control | 1.22 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.79 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.17 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.48 | MC |
| SRR2154082 | seedling | wt | 0.42 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.71 | MC |
| SRR1944583 | seedling | no_treatment | 4.36 | MC |
| SRR358791 | seedling | wt | 6.79 | MC |
| SRR358792 | seedling | wt | 6.42 | MC |
| SRR358793 | seedling | wt | 2.65 | MC |
| SRR358794 | seedling | wt | 6.58 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.67 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.88 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.98 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.86 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.22 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.31 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.44 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.85 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.56 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.96 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.27 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.39 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.32 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.53 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.61 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.98 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.58 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.88 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.24 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.18 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.36 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.75 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.15 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.37 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.57 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.74 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.45 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.08 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.97 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.55 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.11 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.05 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.86 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.11 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.90 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.86 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.28 | MC |