| SRR4457260 | 2nd_leaf | DAH28 | 2.85 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.37 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.09 | MC |
| SRR3745125 | anther | wt | 1.64 | MC |
| SRR3745126 | anther | wt | 2.59 | MC |
| SRR3745127 | anther | wt | 2.43 | MC |
| SRR358796 | callus | wt | 8.91 | MC |
| SRR5560727 | caryopsis | wild_type | 4.66 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.59 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.14 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.09 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.30 | MC |
| SRR7265400 | coleoptile | 2dA | 3.42 | MC |
| SRR7265401 | coleoptile | 2dA | 3.12 | MC |
| SRR7265402 | coleoptile | 2dA | 2.93 | MC |
| SRR7265406 | coleoptile | 3dA | 1.23 | MC |
| SRR7265407 | coleoptile | 3dA | 0.94 | MC |
| SRR7265408 | coleoptile | 3dA | 0.64 | MC |
| SRR7265409 | coleoptile | 3dN | 2.62 | MC |
| SRR7265410 | coleoptile | 3dN | 1.98 | MC |
| SRR7265411 | coleoptile | 3dN | 2.10 | MC |
| SRR7265412 | coleoptile | 4dA | 2.16 | MC |
| SRR7265413 | coleoptile | 4dA | 3.51 | MC |
| SRR7265414 | coleoptile | 4dA | 3.30 | MC |
| SRR7265415 | coleoptile | 4dN | 2.85 | MC |
| SRR7265416 | coleoptile | 4dN | 3.04 | MC |
| SRR7265417 | coleoptile | 4dN | 2.46 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.52 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.53 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.83 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.63 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.34 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.62 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.65 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.23 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.49 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.69 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.72 | MC |
| SRR7265382 | embryo | 3hA | 3.40 | MC |
| SRR7265383 | embryo | 3hA | 3.98 | MC |
| SRR7265384 | embryo | 3hA | 3.51 | MC |
| SRR7265394 | embryo | 24hA | 4.34 | MC |
| SRR2338866 | endosprem | control | 3.77 | MC |
| SRR2338868 | endosprem | high_temperature | 2.28 | MC |
| SRR976168 | flag_leaf | wild_type | 1.78 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.89 | MC |
| SRR8060835 | leaf | wild_type | 2.08 | MC |
| SRR8060836 | leaf | wild_type | 1.72 | MC |
| SRR8060837 | leaf | wild_type | 2.13 | MC |
| SRR8240824 | leaf | wild_type | 1.86 | MC |
| SRR8240825 | leaf | wild_type | 1.97 | MC |
| SRR8240826 | leaf | wild_type | 1.67 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.73 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.20 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.77 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.18 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.21 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.22 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.86 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.92 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.65 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.59 | MC |
| SRR6417968 | leaf | H2O_control | 3.55 | MC |
| SRR6417969 | leaf | H2O_control | 3.02 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.00 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.81 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.02 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.59 | MC |
| SRR6502088 | leaf | control | 2.42 | MC |
| SRR6502089 | leaf | control | 1.53 | MC |
| SRR6502090 | leaf | control | 1.91 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.90 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.57 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502100 | leaf | control | 1.42 | MC |
| SRR6502101 | leaf | control | 1.30 | MC |
| SRR6502102 | leaf | control | 1.32 | MC |
| SRR5856937 | leaf | salt | 1.80 | MC |
| SRR6168973 | leaf | none (control) | 4.02 | MC |
| SRR6168974 | leaf | none (control) | 3.19 | MC |
| SRR6168975 | leaf | none (control) | 3.04 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.09 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.93 | MC |
| SRR5110430 | panicle | Dawn | 1.42 | MC |
| SRR5110431 | panicle | Dawn | 2.67 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.86 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.68 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.68 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.95 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.27 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.48 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.79 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.19 | MC |
| SRR5110445 | panicle | Dusk | 3.89 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.55 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.21 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.26 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.45 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.45 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.84 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.41 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.65 | MC |
| SRR4947491 | root | Al | 3.58 | MC |
| SRR4947507 | root | Al | 5.21 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.20 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.19 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.69 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.63 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.96 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.18 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.18 | MC |
| SRR2154082 | seedling | wt | 1.38 | MC |
| SRR2154083 | seedling | wt | 1.01 | MC |
| SRR2154085 | seedling | wt | 1.94 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.06 | MC |
| SRR358793 | seedling | wt | 0.78 | MC |
| SRR358794 | seedling | wt | 0.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.83 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.44 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.04 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.95 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.29 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.72 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.62 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.51 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.88 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.90 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.22 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.58 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.85 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.50 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.91 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.48 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.68 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.53 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.15 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.59 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.19 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.06 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.26 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.48 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.54 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.62 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.73 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.90 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.51 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.35 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.95 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.98 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.33 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.99 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.95 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.57 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.92 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 8.37 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.06 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.95 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.87 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.92 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.23 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.35 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.06 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.71 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.98 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.00 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.87 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.42 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.10 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.87 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.25 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.20 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.04 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.30 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.44 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.25 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.56 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.77 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.67 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.81 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.77 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.22 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.41 | MC |