| SRR4457264 | 2nd_leaf | DAH44 | 0.91 | MC |
| SRR358795 | callus | wt | 1.53 | MC |
| SRR5560728 | caryopsis | wild_type | 0.65 | MC |
| SRR5560729 | caryopsis | wild_type | 0.70 | MC |
| SRR7265403 | coleoptile | 2dN | 0.46 | MC |
| SRR7265404 | coleoptile | 2dN | 0.57 | MC |
| SRR7265406 | coleoptile | 3dA | 0.31 | MC |
| SRR7265409 | coleoptile | 3dN | 0.38 | MC |
| SRR7265413 | coleoptile | 4dA | 0.52 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.43 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265377 | embryo | 1hA | 0.52 | MC |
| SRR7265380 | embryo | 1hN | 0.37 | MC |
| SRR7265383 | embryo | 3hA | 1.66 | MC |
| SRR7265386 | embryo | 3hN | 1.27 | MC |
| SRR7265388 | embryo | 12hA | 0.67 | MC |
| SRR7265389 | embryo | 12hA | 0.60 | MC |
| SRR7265394 | embryo | 24hA | 0.61 | MC |
| SRR7265396 | embryo | 24hA | 0.47 | MC |
| SRR2338868 | endosprem | high_temperature | 0.75 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.26 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.73 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.83 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.51 | MC |
| SRR1213691 | flower | wt | 1.23 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.57 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.23 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.89 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.39 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.81 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.67 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.23 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.70 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.10 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.21 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.59 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.58 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.57 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.72 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.06 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.51 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.88 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.74 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.79 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.43 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.84 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.53 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.53 | MC |
| SRR1761529 | leaf | drought | 0.53 | MC |
| SRR504365 | leaf | wt | 0.23 | MC |
| SRR6417967 | leaf | H2O_control | 0.67 | MC |
| SRR6417968 | leaf | H2O_control | 0.39 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.45 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.58 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.50 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.45 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.51 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR1213692 | leaf | wt | 1.08 | MC |
| SRR1213693 | leaf | wt | 0.84 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR5856929 | leaf | control | 0.25 | MC |
| SRR5856930 | leaf | salt | 0.21 | MC |
| SRR5856933 | leaf | control | 0.37 | MC |
| SRR5856934 | leaf | control | 0.29 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR6168974 | leaf | none (control) | 0.38 | MC |
| SRR6168979 | leaf | none (control) | 0.30 | MC |
| SRR8582888 | panicle | AM | 1.08 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582893 | panicle | PM | 0.24 | MC |
| SRR5110429 | panicle | Dawn | 0.63 | MC |
| SRR5110431 | panicle | Dawn | 1.26 | MC |
| SRR5110432 | panicle | Dawn | 0.40 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.55 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.58 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.00 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.65 | MC |
| SRR5110447 | panicle | Dusk | 0.36 | MC |
| SRR5110448 | panicle | Dusk | 1.66 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.10 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.50 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.57 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.43 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.68 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.29 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.72 | MC |
| SRR1633182 | panicle | WT | 1.22 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.84 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.38 | MC |
| SRR5126147 | root | "mock,1_day" | 0.70 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.32 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.69 | MC |
| SRR5126155 | root | "mock,7_days" | 0.49 | MC |
| SRR5126157 | root | "mock,7_days" | 0.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126165 | root | "mock,14_days" | 0.53 | MC |
| SRR5126169 | root | "mock,14_days" | 0.35 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR1213694 | root | wt | 0.75 | MC |
| SRR1213695 | root | wt | 0.73 | MC |
| SRR4947482 | root | Al | 0.33 | MC |
| SRR4947493 | root | Al | 0.59 | MC |
| SRR4947499 | root | Al | 0.52 | MC |
| SRR4947502 | root | control | 1.46 | MC |
| SRR4947503 | root | control | 0.92 | MC |
| SRR4947507 | root | Al | 2.14 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.30 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.35 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.34 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR2154086 | seedling | wt | 0.51 | MC |
| SRR2154082 | seedling | wt | 0.30 | MC |
| SRR2154083 | seedling | wt | 0.28 | MC |
| SRR2154084 | seedling | wt | 0.73 | MC |
| SRR2154085 | seedling | wt | 0.78 | MC |
| SRR2154087 | seedling | wt | 0.59 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.19 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.37 | MC |
| SRR358794 | seedling | wt | 1.19 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.15 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.63 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.33 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.73 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.78 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.14 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.61 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.07 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.77 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.54 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.73 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.99 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.37 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.62 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.63 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.28 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.62 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.18 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.06 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.08 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.91 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.47 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.36 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.64 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.61 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |