| SRR358797 | callus | wt | 1.07 | MC |
| SRR5560729 | caryopsis | wild_type | 0.79 | MC |
| SRR7265400 | coleoptile | 2dA | 1.93 | MC |
| SRR7265401 | coleoptile | 2dA | 1.55 | MC |
| SRR7265402 | coleoptile | 2dA | 1.41 | MC |
| SRR7265403 | coleoptile | 2dN | 1.70 | MC |
| SRR7265404 | coleoptile | 2dN | 1.61 | MC |
| SRR7265405 | coleoptile | 2dN | 1.48 | MC |
| SRR7265406 | coleoptile | 3dA | 0.91 | MC |
| SRR7265407 | coleoptile | 3dA | 0.91 | MC |
| SRR7265408 | coleoptile | 3dA | 0.48 | MC |
| SRR7265409 | coleoptile | 3dN | 0.73 | MC |
| SRR7265410 | coleoptile | 3dN | 0.57 | MC |
| SRR7265411 | coleoptile | 3dN | 1.14 | MC |
| SRR7265413 | coleoptile | 4dA | 1.72 | MC |
| SRR7265414 | coleoptile | 4dA | 1.23 | MC |
| SRR7265415 | coleoptile | 4dN | 0.83 | MC |
| SRR7265416 | coleoptile | 4dN | 0.85 | MC |
| SRR7265417 | coleoptile | 4dN | 0.45 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.18 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.15 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.14 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.10 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.08 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.53 | MC |
| SRR7265376 | embryo | 1hA | 1.31 | MC |
| SRR7265377 | embryo | 1hA | 1.34 | MC |
| SRR7265378 | embryo | 1hA | 0.95 | MC |
| SRR7265379 | embryo | 1hN | 1.36 | MC |
| SRR7265380 | embryo | 1hN | 1.29 | MC |
| SRR7265381 | embryo | 1hN | 1.59 | MC |
| SRR7265382 | embryo | 3hA | 1.15 | MC |
| SRR7265383 | embryo | 3hA | 1.12 | MC |
| SRR7265384 | embryo | 3hA | 0.96 | MC |
| SRR7265385 | embryo | 3hN | 0.90 | MC |
| SRR7265386 | embryo | 3hN | 0.66 | MC |
| SRR7265387 | embryo | 3hN | 0.87 | MC |
| SRR7265388 | embryo | 12hA | 1.63 | MC |
| SRR7265389 | embryo | 12hA | 2.73 | MC |
| SRR7265390 | embryo | 12hA | 2.14 | MC |
| SRR7265391 | embryo | 12hN | 1.63 | MC |
| SRR7265392 | embryo | 12hN | 1.95 | MC |
| SRR7265393 | embryo | 12hN | 1.64 | MC |
| SRR7265394 | embryo | 24hA | 2.96 | MC |
| SRR7265395 | embryo | 24hA | 2.57 | MC |
| SRR7265396 | embryo | 24hA | 1.80 | MC |
| SRR7265397 | embryo | 24hN | 2.18 | MC |
| SRR7265398 | embryo | 24hN | 2.42 | MC |
| SRR7265399 | embryo | 24hN | 1.77 | MC |
| SRR1213691 | flower | wt | 0.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.41 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.51 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.62 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.10 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.25 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.34 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.82 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.32 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.46 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.49 | MC |
| SRR504365 | leaf | wt | 0.19 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.38 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.35 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.56 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.46 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.62 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR1213692 | leaf | wt | 0.69 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502088 | leaf | control | 0.31 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502101 | leaf | control | 0.43 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856934 | leaf | control | 0.20 | MC |
| SRR5856937 | leaf | salt | 0.16 | MC |
| SRR6168973 | leaf | none (control) | 0.29 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.42 | MC |
| SRR1633182 | panicle | WT | 0.90 | MC |
| SRR1633185 | panicle | WT | 1.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.36 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.35 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.65 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126169 | root | "mock,14_days" | 0.51 | MC |
| SRR1213695 | root | wt | 0.22 | MC |
| SRR4947494 | root | control | 0.58 | MC |
| SRR4947501 | root | Al | 0.55 | MC |
| SRR4947504 | root | control | 0.87 | MC |
| SRR4947505 | root | control | 1.05 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.69 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.85 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502106 | root | control | 0.47 | MC |
| SRR6502107 | root | control | 0.31 | MC |
| SRR6502108 | root | control | 0.45 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.22 | MC |
| SRR2154086 | seedling | wt | 0.43 | MC |
| SRR2154082 | seedling | wt | 0.51 | MC |
| SRR2154084 | seedling | wt | 0.30 | MC |
| SRR3098742 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.20 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.24 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.79 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.47 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.96 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.84 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.15 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.19 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.48 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.35 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.00 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.42 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.93 | MC |