| SRR3745125 | anther | wt | 1.18 | MC |
| SRR3745126 | anther | wt | 0.85 | MC |
| SRR3745127 | anther | wt | 0.91 | MC |
| SRR358795 | callus | wt | 7.77 | MC |
| SRR358796 | callus | wt | 7.80 | MC |
| SRR358797 | callus | wt | 8.83 | MC |
| SRR6320473 | carpel | wt | 1.14 | MC |
| SRR6320498 | carpel | wt | 1.53 | MC |
| SRR5560727 | caryopsis | wild_type | 4.86 | MC |
| SRR5560729 | caryopsis | wild_type | 4.83 | MC |
| SRR4947495 | root | control | 3.32 | MC |
| SRR7265400 | coleoptile | 2dA | 2.94 | MC |
| SRR7265403 | coleoptile | 2dN | 2.75 | MC |
| SRR7265404 | coleoptile | 2dN | 2.90 | MC |
| SRR7265405 | coleoptile | 2dN | 2.44 | MC |
| SRR7265406 | coleoptile | 3dA | 3.31 | MC |
| SRR7265408 | coleoptile | 3dA | 2.34 | MC |
| SRR7265409 | coleoptile | 3dN | 2.29 | MC |
| SRR7265410 | coleoptile | 3dN | 1.84 | MC |
| SRR7265411 | coleoptile | 3dN | 2.23 | MC |
| SRR7265412 | coleoptile | 4dA | 2.96 | MC |
| SRR7265413 | coleoptile | 4dA | 4.75 | MC |
| SRR7265415 | coleoptile | 4dN | 2.23 | MC |
| SRR7265416 | coleoptile | 4dN | 2.73 | MC |
| SRR7265417 | coleoptile | 4dN | 2.56 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.90 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.18 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.26 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.95 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.96 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.73 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.24 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.78 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.78 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.44 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.27 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.77 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.53 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.10 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.95 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.76 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.84 | MC |
| SRR7265376 | embryo | 1hA | 2.10 | MC |
| SRR7265377 | embryo | 1hA | 1.61 | MC |
| SRR7265378 | embryo | 1hA | 2.00 | MC |
| SRR7265379 | embryo | 1hN | 1.68 | MC |
| SRR7265380 | embryo | 1hN | 1.70 | MC |
| SRR7265381 | embryo | 1hN | 2.01 | MC |
| SRR7265382 | embryo | 3hA | 2.34 | MC |
| SRR7265383 | embryo | 3hA | 2.88 | MC |
| SRR7265384 | embryo | 3hA | 2.69 | MC |
| SRR7265385 | embryo | 3hN | 2.29 | MC |
| SRR7265386 | embryo | 3hN | 1.53 | MC |
| SRR7265387 | embryo | 3hN | 1.44 | MC |
| SRR7265388 | embryo | 12hA | 3.64 | MC |
| SRR7265390 | embryo | 12hA | 3.58 | MC |
| SRR7265391 | embryo | 12hN | 4.12 | MC |
| SRR7265392 | embryo | 12hN | 3.69 | MC |
| SRR7265393 | embryo | 12hN | 3.78 | MC |
| SRR7265394 | embryo | 24hA | 4.28 | MC |
| SRR7265395 | embryo | 24hA | 5.01 | MC |
| SRR7265396 | embryo | 24hA | 3.17 | MC |
| SRR7265397 | embryo | 24hN | 3.55 | MC |
| SRR7265398 | embryo | 24hN | 2.94 | MC |
| SRR7265399 | embryo | 24hN | 3.38 | MC |
| SRR2338866 | endosprem | control | 2.93 | MC |
| SRR2338867 | endosprem | control | 2.16 | MC |
| SRR2338869 | endosprem | high_temperature | 2.62 | MC |
| SRR1213691 | flower | wt | 1.81 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.36 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.24 | MC |
| SRR5856930 | leaf | salt | 1.27 | MC |
| SRR5856932 | leaf | salt | 1.04 | MC |
| SRR5856936 | leaf | salt | 1.24 | MC |
| SRR5856937 | leaf | salt | 1.75 | MC |
| SRR5856938 | leaf | salt | 0.89 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.69 | MC |
| SRR6168973 | leaf | none (control) | 1.68 | MC |
| SRR6168974 | leaf | none (control) | 2.29 | MC |
| SRR6168975 | leaf | none (control) | 1.09 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.61 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.04 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.25 | MC |
| SRR6168979 | leaf | none (control) | 1.76 | MC |
| SRR6168980 | leaf | none (control) | 0.41 | MC |
| SRR6168981 | leaf | none (control) | 1.33 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.93 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.59 | MC |
| SRR4947496 | root | control | 3.36 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.02 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.87 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.80 | MC |
| SRR5110445 | panicle | Dusk | 3.34 | MC |
| SRR5110446 | panicle | Dusk | 3.62 | MC |
| SRR5110447 | panicle | Dusk | 4.24 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.97 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.27 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.16 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.72 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.16 | MC |
| SRR1633182 | panicle | WT | 2.23 | MC |
| SRR1633185 | panicle | WT | 1.20 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.21 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.17 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.32 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.01 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.10 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.52 | MC |
| SRR5126148 | root | "mock,1_day" | 3.68 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.80 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.84 | MC |
| SRR5126165 | root | "mock,14_days" | 4.63 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.58 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.06 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.99 | MC |
| SRR1213694 | root | wt | 2.73 | MC |
| SRR4947478 | root | control | 2.93 | MC |
| SRR4947479 | root | control | 3.09 | MC |
| SRR4947480 | root | control | 4.13 | MC |
| SRR4947481 | root | control | 3.15 | MC |
| SRR4947482 | root | Al | 2.49 | MC |
| SRR4947483 | root | Al | 2.20 | MC |
| SRR4947484 | root | Al | 3.17 | MC |
| SRR4947485 | root | Al | 3.56 | MC |
| SRR4947487 | root | control | 2.52 | MC |
| SRR4947488 | root | control | 2.83 | MC |
| SRR4947489 | root | control | 3.15 | MC |
| SRR4947490 | root | Al | 2.39 | MC |
| SRR4947491 | root | Al | 1.88 | MC |
| SRR4947492 | root | Al | 3.64 | MC |
| SRR4947493 | root | Al | 2.13 | MC |
| SRR4947494 | root | control | 3.48 | MC |
| SRR4947497 | root | control | 4.72 | MC |
| SRR4947498 | root | Al | 4.28 | MC |
| SRR4947499 | root | Al | 2.27 | MC |
| SRR4947500 | root | Al | 4.68 | MC |
| SRR4947501 | root | Al | 3.90 | MC |
| SRR4947502 | root | control | 3.38 | MC |
| SRR4947503 | root | control | 3.47 | MC |
| SRR4947504 | root | control | 4.17 | MC |
| SRR4947505 | root | control | 3.39 | MC |
| SRR4947507 | root | Al | 4.89 | MC |
| SRR4947508 | root | Al | 3.99 | MC |
| SRR4947509 | root | Al | 4.07 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.76 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.14 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.25 | MC |
| SRR6502094 | root | control | 3.47 | MC |
| SRR6502095 | root | control | 3.77 | MC |
| SRR6502096 | root | control | 3.56 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.77 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.31 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.03 | MC |
| SRR6502106 | root | control | 3.54 | MC |
| SRR6502108 | root | control | 4.24 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.61 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.57 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.38 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.81 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.15 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.93 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.40 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.95 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.79 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.19 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.77 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.01 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.89 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.89 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.93 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.05 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.28 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.21 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.21 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.74 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.56 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.30 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.96 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.80 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.62 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.29 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.41 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.59 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.73 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.83 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.11 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.42 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.77 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.55 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.52 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.59 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.61 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.45 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.06 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.36 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.53 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.47 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.77 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.55 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.30 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.38 | MC |