| SRR4457249 | 2nd_leaf | DAH4 | 1.34 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.35 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.56 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.38 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.64 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.32 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.83 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.67 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.10 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.34 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.93 | MC |
| SRR3745126 | anther | wt | 4.83 | MC |
| SRR358795 | callus | wt | 8.01 | MC |
| SRR358797 | callus | wt | 8.82 | MC |
| SRR6320498 | carpel | wt | 3.84 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR4947495 | root | control | 1.43 | MC |
| SRR7265404 | coleoptile | 2dN | 0.49 | MC |
| SRR7265405 | coleoptile | 2dN | 1.52 | MC |
| SRR7265409 | coleoptile | 3dN | 0.72 | MC |
| SRR7265410 | coleoptile | 3dN | 2.84 | MC |
| SRR7265411 | coleoptile | 3dN | 3.21 | MC |
| SRR7265412 | coleoptile | 4dA | 0.83 | MC |
| SRR7265413 | coleoptile | 4dA | 5.11 | MC |
| SRR7265414 | coleoptile | 4dA | 4.06 | MC |
| SRR7265415 | coleoptile | 4dN | 3.98 | MC |
| SRR7265416 | coleoptile | 4dN | 1.99 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.21 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.59 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.02 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.81 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.56 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.19 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.60 | MC |
| SRR7265376 | embryo | 1hA | 2.19 | MC |
| SRR7265377 | embryo | 1hA | 2.16 | MC |
| SRR7265378 | embryo | 1hA | 2.40 | MC |
| SRR7265379 | embryo | 1hN | 2.53 | MC |
| SRR7265380 | embryo | 1hN | 2.54 | MC |
| SRR7265381 | embryo | 1hN | 2.63 | MC |
| SRR7265382 | embryo | 3hA | 3.93 | MC |
| SRR7265383 | embryo | 3hA | 3.39 | MC |
| SRR7265384 | embryo | 3hA | 3.70 | MC |
| SRR7265385 | embryo | 3hN | 2.57 | MC |
| SRR7265386 | embryo | 3hN | 0.28 | MC |
| SRR7265387 | embryo | 3hN | 2.13 | MC |
| SRR7265388 | embryo | 12hA | 3.57 | MC |
| SRR7265391 | embryo | 12hN | 2.54 | MC |
| SRR7265392 | embryo | 12hN | 1.31 | MC |
| SRR7265393 | embryo | 12hN | 1.05 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.86 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.45 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.17 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.90 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.94 | MC |
| SRR8060835 | leaf | wild_type | 0.33 | MC |
| SRR8060837 | leaf | wild_type | 0.46 | MC |
| SRR8240818 | leaf | wild_type | 0.57 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.24 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.14 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.96 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.34 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.61 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.94 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.34 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.29 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.63 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.73 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.49 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.69 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.96 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.67 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.45 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.84 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.06 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.97 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.20 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.75 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.06 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.97 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.20 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.75 | MC |
| SRR1761528 | leaf | drought | 2.06 | MC |
| SRR1761529 | leaf | drought | 2.97 | MC |
| SRR1761530 | leaf | control | 3.20 | MC |
| SRR1761531 | leaf | control | 2.75 | MC |
| SRR504365 | leaf | wt | 3.22 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.06 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.06 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.00 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.52 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.58 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.72 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.96 | MC |
| SRR1213693 | leaf | wt | 0.24 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.11 | MC |
| SRR6502088 | leaf | control | 3.69 | MC |
| SRR6502090 | leaf | control | 3.12 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.58 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.00 | MC |
| SRR6502102 | leaf | control | 4.00 | MC |
| SRR5856928 | leaf | control | 0.28 | MC |
| SRR5856929 | leaf | control | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.67 | MC |
| SRR5856933 | leaf | control | 0.45 | MC |
| SRR5856935 | leaf | control | 0.61 | MC |
| SRR5856936 | leaf | salt | 0.15 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.78 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.65 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.79 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.76 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.67 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.94 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.80 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.57 | MC |
| SRR6168975 | leaf | none (control) | 1.39 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.41 | MC |
| SRR6168979 | leaf | none (control) | 0.38 | MC |
| SRR6168980 | leaf | none (control) | 0.61 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR8582888 | panicle | AM | 2.77 | MC |
| SRR8582891 | panicle | PM | 1.39 | MC |
| SRR8582892 | panicle | PM | 1.54 | MC |
| SRR8582893 | panicle | PM | 0.41 | MC |
| SRR5110429 | panicle | Dawn | 2.66 | MC |
| SRR5110430 | panicle | Dawn | 0.70 | MC |
| SRR5110431 | panicle | Dawn | 1.24 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.63 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.53 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.05 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.14 | MC |
| SRR5110447 | panicle | Dusk | 1.33 | MC |
| SRR5110448 | panicle | Dusk | 0.91 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.44 | MC |
| SRR1633182 | panicle | WT | 2.20 | MC |
| SRR1633185 | panicle | WT | 3.06 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.58 | MC |
| SRR5126149 | root | "mock,1_day" | 0.70 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.62 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 2.51 | MC |
| SRR5126155 | root | "mock,7_days" | 2.70 | MC |
| SRR5126157 | root | "mock,7_days" | 0.61 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.88 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.64 | MC |
| SRR5126165 | root | "mock,14_days" | 2.95 | MC |
| SRR5126167 | root | "mock,14_days" | 1.32 | MC |
| SRR5126169 | root | "mock,14_days" | 1.24 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.32 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.64 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.16 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.48 | MC |
| SRR1213695 | root | wt | 1.29 | MC |
| SRR4947478 | root | control | 2.83 | MC |
| SRR4947479 | root | control | 4.00 | MC |
| SRR4947480 | root | control | 1.64 | MC |
| SRR4947481 | root | control | 4.74 | MC |
| SRR4947482 | root | Al | 1.29 | MC |
| SRR4947483 | root | Al | 2.01 | MC |
| SRR4947484 | root | Al | 2.79 | MC |
| SRR4947485 | root | Al | 1.14 | MC |
| SRR4947488 | root | control | 1.18 | MC |
| SRR4947489 | root | control | 2.29 | MC |
| SRR4947490 | root | Al | 1.97 | MC |
| SRR4947492 | root | Al | 4.99 | MC |
| SRR4947493 | root | Al | 3.03 | MC |
| SRR4947494 | root | control | 2.17 | MC |
| SRR4947497 | root | control | 4.27 | MC |
| SRR4947498 | root | Al | 2.10 | MC |
| SRR4947499 | root | Al | 2.53 | MC |
| SRR4947500 | root | Al | 3.12 | MC |
| SRR4947502 | root | control | 0.73 | MC |
| SRR4947503 | root | control | 3.17 | MC |
| SRR4947504 | root | control | 1.48 | MC |
| SRR4947505 | root | control | 2.34 | MC |
| SRR4947506 | root | Al | 0.42 | MC |
| SRR4947507 | root | Al | 2.30 | MC |
| SRR4947508 | root | Al | 1.33 | MC |
| SRR4947509 | root | Al | 3.74 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.50 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.64 | MC |
| SRR6502094 | root | control | 0.48 | MC |
| SRR6502095 | root | control | 2.44 | MC |
| SRR6502096 | root | control | 1.32 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.33 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.61 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.54 | MC |
| SRR6502106 | root | control | 3.61 | MC |
| SRR6502107 | root | control | 2.34 | MC |
| SRR6502108 | root | control | 3.81 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.21 | MC |
| SRR1740436 | root_differentiation_zone | wt | 3.15 | MC |
| SRR6441554 | seedling | wild_type | 0.59 | MC |
| SRR6441555 | seedling | wild_type | 0.93 | MC |
| SRR2154086 | seedling | wt | 1.70 | MC |
| SRR2154082 | seedling | wt | 1.18 | MC |
| SRR2154083 | seedling | wt | 1.63 | MC |
| SRR3098741 | seedling | wt | 0.44 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.57 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.53 | MC |
| SRR358791 | seedling | wt | 4.55 | MC |
| SRR358792 | seedling | wt | 3.94 | MC |
| SRR358793 | seedling | wt | 4.80 | MC |
| SRR358794 | seedling | wt | 4.02 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.67 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.37 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.09 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.76 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.96 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.52 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.34 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.11 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.09 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.88 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.39 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.93 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.20 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.99 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.16 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.41 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.96 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.83 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.52 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.53 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.98 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.21 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.82 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.07 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.07 | MC |