| SRR4457252 | 2nd_leaf | DAH12 | 0.23 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.27 | MC |
| SRR5560729 | caryopsis | wild_type | 0.44 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR7265401 | coleoptile | 2dA | 0.37 | MC |
| SRR7265404 | coleoptile | 2dN | 0.57 | MC |
| SRR7265405 | coleoptile | 2dN | 0.51 | MC |
| SRR7265407 | coleoptile | 3dA | 0.32 | MC |
| SRR7265408 | coleoptile | 3dA | 0.65 | MC |
| SRR7265409 | coleoptile | 3dN | 0.39 | MC |
| SRR7265411 | coleoptile | 3dN | 0.97 | MC |
| SRR7265415 | coleoptile | 4dN | 1.97 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.83 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.49 | MC |
| SRR7265379 | embryo | 1hN | 0.43 | MC |
| SRR7265387 | embryo | 3hN | 0.51 | MC |
| SRR7265394 | embryo | 24hA | 0.89 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.39 | MC |
| SRR1213691 | flower | wt | 0.66 | MC |
| SRR8060835 | leaf | wild_type | 0.57 | MC |
| SRR8060836 | leaf | wild_type | 0.23 | MC |
| SRR8060837 | leaf | wild_type | 0.45 | MC |
| SRR8240819 | leaf | wild_type | 0.29 | MC |
| SRR8240820 | leaf | wild_type | 0.41 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.68 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.55 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.11 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.82 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.38 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.71 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.55 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.48 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.79 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.93 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.72 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.92 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.83 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.62 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.79 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.53 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.79 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.68 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.43 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.95 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.80 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.41 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.41 | MC |
| SRR1761528 | leaf | drought | 1.41 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.38 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR1213692 | leaf | wt | 0.52 | MC |
| SRR1213693 | leaf | wt | 0.39 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.27 | MC |
| SRR5856933 | leaf | control | 1.46 | MC |
| SRR6168974 | leaf | none (control) | 1.47 | MC |
| SRR6168975 | leaf | none (control) | 0.37 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.09 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.97 | MC |
| SRR6168979 | leaf | none (control) | 0.23 | MC |
| SRR6168981 | leaf | none (control) | 0.61 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.75 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR8582888 | panicle | AM | 0.57 | MC |
| SRR8582889 | panicle | AM | 0.62 | MC |
| SRR8582890 | panicle | AM | 0.29 | MC |
| SRR8582893 | panicle | PM | 0.54 | MC |
| SRR5110445 | panicle | Dusk | 1.34 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.73 | MC |
| SRR5126147 | root | "mock,1_day" | 0.57 | MC |
| SRR5126148 | root | "mock,1_day" | 1.25 | MC |
| SRR5126149 | root | "mock,1_day" | 1.38 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.30 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126153 | root | "mock,7_days" | 0.63 | MC |
| SRR5126155 | root | "mock,7_days" | 0.66 | MC |
| SRR5126157 | root | "mock,7_days" | 3.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.70 | MC |
| SRR5126165 | root | "mock,14_days" | 0.94 | MC |
| SRR5126167 | root | "mock,14_days" | 0.29 | MC |
| SRR5126169 | root | "mock,14_days" | 1.99 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR1213694 | root | wt | 1.18 | MC |
| SRR1213695 | root | wt | 0.35 | MC |
| SRR4947480 | root | control | 0.89 | MC |
| SRR4947481 | root | control | 2.25 | MC |
| SRR4947485 | root | Al | 0.70 | MC |
| SRR4947489 | root | control | 1.84 | MC |
| SRR4947494 | root | control | 2.65 | MC |
| SRR4947497 | root | control | 0.73 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.78 | MC |
| SRR6502094 | root | control | 1.28 | MC |
| SRR6502095 | root | control | 1.73 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502106 | root | control | 2.25 | MC |
| SRR6502107 | root | control | 2.40 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.12 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.28 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.21 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.32 | MC |
| SRR6441554 | seedling | wild_type | 0.70 | MC |
| SRR6441555 | seedling | wild_type | 0.35 | MC |
| SRR2154082 | seedling | wt | 3.36 | MC |
| SRR2154085 | seedling | wt | 0.93 | MC |
| SRR2154087 | seedling | wt | 0.47 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.29 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.85 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.28 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.15 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.71 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.52 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.96 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.30 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.89 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.79 | MC |