| SRR4457250 | 2nd_leaf | DAH4 | 0.59 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.48 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.82 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.50 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.37 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.37 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.12 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.16 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.94 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.94 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 5.10 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.78 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.82 | MC |
| SRR358795 | callus | wt | 1.13 | MC |
| SRR358796 | callus | wt | 1.34 | MC |
| SRR5560727 | caryopsis | wild_type | 3.96 | MC |
| SRR5560728 | caryopsis | wild_type | 1.50 | MC |
| SRR5560729 | caryopsis | wild_type | 1.35 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.76 | MC |
| SRR7265400 | coleoptile | 2dA | 1.53 | MC |
| SRR7265401 | coleoptile | 2dA | 1.43 | MC |
| SRR7265402 | coleoptile | 2dA | 1.65 | MC |
| SRR7265408 | coleoptile | 3dA | 0.92 | MC |
| SRR7265412 | coleoptile | 4dA | 1.99 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.58 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.00 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR7265394 | embryo | 24hA | 0.89 | MC |
| SRR7265396 | embryo | 24hA | 0.69 | MC |
| SRR2338866 | endosprem | control | 3.19 | MC |
| SRR2338868 | endosprem | high_temperature | 0.44 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.93 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.65 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.47 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.86 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.57 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.58 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.34 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.54 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.66 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.43 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.78 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.84 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.77 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.18 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.11 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.88 | MC |
| SRR1213691 | flower | wt | 1.44 | MC |
| SRR8060836 | leaf | wild_type | 2.53 | MC |
| SRR8060837 | leaf | wild_type | 2.02 | MC |
| SRR8240824 | leaf | wild_type | 0.94 | MC |
| SRR8240825 | leaf | wild_type | 1.40 | MC |
| SRR8240818 | leaf | wild_type | 1.28 | MC |
| SRR8240819 | leaf | wild_type | 0.43 | MC |
| SRR8240820 | leaf | wild_type | 0.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.54 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.59 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.90 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.82 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.38 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.95 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.82 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.36 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.79 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.95 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.72 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.44 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.35 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.37 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.38 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.44 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.48 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.94 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.86 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.98 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.06 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.44 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.83 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.78 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.81 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.46 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.56 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.65 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.46 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.56 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.65 | MC |
| SRR1761528 | leaf | drought | 0.46 | MC |
| SRR1761530 | leaf | control | 4.56 | MC |
| SRR1761531 | leaf | control | 0.65 | MC |
| SRR504365 | leaf | wt | 2.67 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.38 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.39 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.93 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.53 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.38 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.29 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.65 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.80 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.04 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.81 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.84 | MC |
| SRR1213692 | leaf | wt | 0.50 | MC |
| SRR1213693 | leaf | wt | 0.74 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.21 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.54 | MC |
| SRR6502089 | leaf | control | 0.47 | MC |
| SRR6502090 | leaf | control | 1.65 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.41 | MC |
| SRR6502100 | leaf | control | 3.99 | MC |
| SRR5856928 | leaf | control | 0.51 | MC |
| SRR5856931 | leaf | salt | 1.06 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.78 | MC |
| SRR6168974 | leaf | none (control) | 0.61 | MC |
| SRR6168975 | leaf | none (control) | 0.79 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.52 | MC |
| SRR6168979 | leaf | none (control) | 1.85 | MC |
| SRR6168981 | leaf | none (control) | 1.46 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.01 | MC |
| SRR8582889 | panicle | AM | 1.08 | MC |
| SRR8582891 | panicle | PM | 5.99 | MC |
| SRR8582892 | panicle | PM | 5.49 | MC |
| SRR8582893 | panicle | PM | 3.10 | MC |
| SRR5110431 | panicle | Dawn | 1.46 | MC |
| SRR4947496 | root | control | 2.97 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.24 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.36 | MC |
| SRR5110446 | panicle | Dusk | 0.37 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.42 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.41 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.67 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.70 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.70 | MC |
| SRR5126157 | root | "mock,7_days" | 1.97 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.21 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.85 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.46 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213694 | root | wt | 2.99 | MC |
| SRR1213695 | root | wt | 0.72 | MC |
| SRR4947479 | root | control | 3.67 | MC |
| SRR4947481 | root | control | 2.68 | MC |
| SRR4947482 | root | Al | 3.53 | MC |
| SRR4947484 | root | Al | 3.01 | MC |
| SRR4947485 | root | Al | 1.29 | MC |
| SRR4947489 | root | control | 1.33 | MC |
| SRR4947491 | root | Al | 3.09 | MC |
| SRR4947492 | root | Al | 2.88 | MC |
| SRR4947493 | root | Al | 0.78 | MC |
| SRR4947494 | root | control | 1.24 | MC |
| SRR4947497 | root | control | 0.82 | MC |
| SRR4947498 | root | Al | 2.00 | MC |
| SRR4947500 | root | Al | 3.11 | MC |
| SRR4947501 | root | Al | 2.01 | MC |
| SRR4947504 | root | control | 2.87 | MC |
| SRR4947505 | root | control | 1.59 | MC |
| SRR4947507 | root | Al | 1.17 | MC |
| SRR4947508 | root | Al | 2.21 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.31 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.62 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.57 | MC |
| SRR6441554 | seedling | wild_type | 1.39 | MC |
| SRR6441555 | seedling | wild_type | 1.77 | MC |
| SRR2154086 | seedling | wt | 2.84 | MC |
| SRR2154082 | seedling | wt | 3.09 | MC |
| SRR2154084 | seedling | wt | 2.98 | MC |
| SRR2154085 | seedling | wt | 1.75 | MC |
| SRR2154087 | seedling | wt | 2.42 | MC |
| SRR3098741 | seedling | wt | 1.85 | MC |
| SRR3098742 | seedling | wt | 2.17 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.26 | MC |
| SRR2857720 | seedling | drought_stress_1h | 4.03 | MC |
| SRR2857721 | seedling | drought_stress_6h | 3.00 | MC |
| SRR1944583 | seedling | no_treatment | 2.36 | MC |
| SRR358791 | seedling | wt | 6.89 | MC |
| SRR358793 | seedling | wt | 6.49 | MC |
| SRR358794 | seedling | wt | 5.37 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.48 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.32 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.07 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.35 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.87 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.24 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.84 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.27 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.23 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.47 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.97 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.82 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.53 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.55 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.09 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.92 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.51 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.14 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.95 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.35 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.37 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.50 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.35 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.51 | MC |