| SRR4457260 | 2nd_leaf | DAH28 | 3.51 | MC |
| SRR6320473 | carpel | wt | 5.89 | MC |
| SRR5560727 | caryopsis | wild_type | 2.54 | MC |
| SRR5560728 | caryopsis | wild_type | 2.06 | MC |
| SRR5560729 | caryopsis | wild_type | 4.72 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.67 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.46 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.27 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.44 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.47 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.33 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.18 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.61 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.48 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.68 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.11 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.58 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.73 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.69 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.09 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.17 | MC |
| SRR8060835 | leaf | wild_type | 1.72 | MC |
| SRR8060836 | leaf | wild_type | 1.05 | MC |
| SRR8060837 | leaf | wild_type | 1.65 | MC |
| SRR8240824 | leaf | wild_type | 2.38 | MC |
| SRR8240826 | leaf | wild_type | 1.18 | MC |
| SRR8240818 | leaf | wild_type | 0.89 | MC |
| SRR8240820 | leaf | wild_type | 1.71 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.17 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.02 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.80 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.76 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.75 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.19 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.54 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.66 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.52 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.74 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.61 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.61 | MC |
| SRR1761530 | leaf | control | 4.61 | MC |
| SRR504365 | leaf | wt | 2.48 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.21 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.07 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.62 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.97 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.13 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.45 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.07 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.48 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.07 | MC |
| SRR1213692 | leaf | wt | 3.57 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.80 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.95 | MC |
| SRR5856928 | leaf | control | 1.85 | MC |
| SRR5856931 | leaf | salt | 0.41 | MC |
| SRR5856932 | leaf | salt | 0.30 | MC |
| SRR5856933 | leaf | control | 1.58 | MC |
| SRR5856934 | leaf | control | 1.44 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.71 | MC |
| SRR5856938 | leaf | salt | 0.29 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 9.90 | MC |
| SRR6168973 | leaf | none (control) | 1.63 | MC |
| SRR6168974 | leaf | none (control) | 3.14 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.18 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR6168979 | leaf | none (control) | 1.87 | MC |
| SRR6168981 | leaf | none (control) | 0.90 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.59 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR8582888 | panicle | AM | 1.69 | MC |
| SRR8582890 | panicle | AM | 0.62 | MC |
| SRR8582891 | panicle | PM | 0.94 | MC |
| SRR8582892 | panicle | PM | 7.74 | MC |
| SRR8582893 | panicle | PM | 2.31 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.70 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.68 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.66 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.11 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.55 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.36 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.08 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.75 | MC |
| SRR5126155 | root | "mock,7_days" | 2.02 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.39 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.41 | MC |
| SRR5126165 | root | "mock,14_days" | 3.45 | MC |
| SRR5126167 | root | "mock,14_days" | 3.86 | MC |
| SRR5126169 | root | "mock,14_days" | 2.26 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.77 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.42 | MC |
| SRR4947479 | root | control | 3.60 | MC |
| SRR4947490 | root | Al | 3.37 | MC |
| SRR4947498 | root | Al | 5.43 | MC |
| SRR4947503 | root | control | 3.47 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.38 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.29 | MC |
| SRR6502106 | root | control | 3.60 | MC |
| SRR1740436 | root_differentiation_zone | wt | 3.07 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.86 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.03 | MC |
| SRR6441554 | seedling | wild_type | 0.33 | MC |
| SRR6441555 | seedling | wild_type | 0.28 | MC |
| SRR2154086 | seedling | wt | 1.28 | MC |
| SRR2154085 | seedling | wt | 2.44 | MC |
| SRR2154087 | seedling | wt | 3.65 | MC |
| SRR3098741 | seedling | wt | 1.25 | MC |
| SRR3098742 | seedling | wt | 0.76 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.06 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.80 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.69 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.94 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.94 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.23 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.65 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.52 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.99 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.94 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.95 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.21 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.08 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.58 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.59 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.39 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.33 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.16 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.93 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.43 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.15 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.72 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.81 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.34 | MC |