| SRR4457251 | 2nd_leaf | DAH4 | 0.36 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.86 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.38 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.97 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.34 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.65 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.65 | MC |
| SRR5560727 | caryopsis | wild_type | 1.31 | MC |
| SRR5560728 | caryopsis | wild_type | 0.95 | MC |
| SRR5560729 | caryopsis | wild_type | 0.65 | MC |
| SRR4947495 | root | control | 0.71 | MC |
| SRR7265400 | coleoptile | 2dA | 2.57 | MC |
| SRR7265401 | coleoptile | 2dA | 2.85 | MC |
| SRR7265402 | coleoptile | 2dA | 0.97 | MC |
| SRR7265403 | coleoptile | 2dN | 1.09 | MC |
| SRR7265404 | coleoptile | 2dN | 0.41 | MC |
| SRR7265405 | coleoptile | 2dN | 1.95 | MC |
| SRR7265409 | coleoptile | 3dN | 0.61 | MC |
| SRR7265411 | coleoptile | 3dN | 1.38 | MC |
| SRR7265412 | coleoptile | 4dA | 0.44 | MC |
| SRR7265413 | coleoptile | 4dA | 4.74 | MC |
| SRR7265416 | coleoptile | 4dN | 0.83 | MC |
| SRR7265417 | coleoptile | 4dN | 1.25 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.46 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.31 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.72 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.83 | MC |
| SRR7265376 | embryo | 1hA | 3.14 | MC |
| SRR7265377 | embryo | 1hA | 1.39 | MC |
| SRR7265378 | embryo | 1hA | 2.83 | MC |
| SRR7265379 | embryo | 1hN | 1.73 | MC |
| SRR7265381 | embryo | 1hN | 0.75 | MC |
| SRR7265382 | embryo | 3hA | 1.40 | MC |
| SRR7265383 | embryo | 3hA | 3.02 | MC |
| SRR7265384 | embryo | 3hA | 2.58 | MC |
| SRR7265385 | embryo | 3hN | 2.59 | MC |
| SRR7265386 | embryo | 3hN | 3.05 | MC |
| SRR7265387 | embryo | 3hN | 1.97 | MC |
| SRR7265388 | embryo | 12hA | 0.87 | MC |
| SRR7265389 | embryo | 12hA | 1.68 | MC |
| SRR7265390 | embryo | 12hA | 0.54 | MC |
| SRR7265391 | embryo | 12hN | 1.96 | MC |
| SRR7265392 | embryo | 12hN | 1.64 | MC |
| SRR7265393 | embryo | 12hN | 2.79 | MC |
| SRR7265394 | embryo | 24hA | 4.26 | MC |
| SRR7265395 | embryo | 24hA | 1.05 | MC |
| SRR7265396 | embryo | 24hA | 2.70 | MC |
| SRR7265398 | embryo | 24hN | 0.43 | MC |
| SRR7265399 | embryo | 24hN | 3.99 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.48 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.03 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.56 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.40 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.53 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.46 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.48 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.79 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.21 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.28 | MC |
| SRR1213691 | flower | wt | 0.94 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.13 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.81 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.92 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.85 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.70 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.79 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6502089 | leaf | control | 0.94 | MC |
| SRR6502090 | leaf | control | 0.61 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.52 | MC |
| SRR5856929 | leaf | control | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR5856934 | leaf | control | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.28 | MC |
| SRR6168979 | leaf | none (control) | 0.37 | MC |
| SRR8582891 | panicle | PM | 0.80 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.33 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.62 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126155 | root | "mock,7_days" | 0.36 | MC |
| SRR5126157 | root | "mock,7_days" | 0.72 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.07 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.68 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126167 | root | "mock,14_days" | 0.26 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.56 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR1213694 | root | wt | 0.87 | MC |
| SRR4947485 | root | Al | 0.76 | MC |
| SRR4947488 | root | control | 2.06 | MC |
| SRR4947489 | root | control | 0.60 | MC |
| SRR4947506 | root | Al | 0.51 | MC |
| SRR6502108 | root | control | 0.68 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.47 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.79 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.72 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.93 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.03 | MC |
| SRR2154086 | seedling | wt | 0.71 | MC |
| SRR2154082 | seedling | wt | 0.46 | MC |
| SRR2154085 | seedling | wt | 0.53 | MC |
| SRR2154087 | seedling | wt | 1.08 | MC |
| SRR1944583 | seedling | no_treatment | 0.38 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.47 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.22 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.96 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.16 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.65 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.55 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |