| SRR3745125 | anther | wt | 1.09 | MC |
| SRR3745126 | anther | wt | 0.64 | MC |
| SRR5560727 | caryopsis | wild_type | 0.40 | MC |
| SRR5560728 | caryopsis | wild_type | 0.31 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.50 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.13 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.15 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.83 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.45 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.34 | MC |
| SRR7265376 | embryo | 1hA | 0.91 | MC |
| SRR7265377 | embryo | 1hA | 1.11 | MC |
| SRR7265378 | embryo | 1hA | 1.13 | MC |
| SRR7265379 | embryo | 1hN | 0.78 | MC |
| SRR7265381 | embryo | 1hN | 1.01 | MC |
| SRR7265382 | embryo | 3hA | 1.28 | MC |
| SRR7265383 | embryo | 3hA | 2.39 | MC |
| SRR7265384 | embryo | 3hA | 1.72 | MC |
| SRR7265385 | embryo | 3hN | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.93 | MC |
| SRR7265387 | embryo | 3hN | 0.83 | MC |
| SRR2338867 | endosprem | control | 0.39 | MC |
| SRR976168 | flag_leaf | wild_type | 0.63 | MC |
| SRR8060835 | leaf | wild_type | 0.32 | MC |
| SRR8060836 | leaf | wild_type | 0.26 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.58 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.52 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.70 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.17 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.41 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.35 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.36 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.99 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.55 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.99 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.55 | MC |
| SRR1761528 | leaf | drought | 0.99 | MC |
| SRR1761529 | leaf | drought | 0.55 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.49 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR5856927 | leaf | control | 0.46 | MC |
| SRR5856928 | leaf | control | 0.94 | MC |
| SRR5856929 | leaf | control | 0.43 | MC |
| SRR5856930 | leaf | salt | 0.92 | MC |
| SRR5856931 | leaf | salt | 0.75 | MC |
| SRR5856932 | leaf | salt | 0.67 | MC |
| SRR5856934 | leaf | control | 0.23 | MC |
| SRR5856936 | leaf | salt | 0.42 | MC |
| SRR5856937 | leaf | salt | 0.26 | MC |
| SRR5856938 | leaf | salt | 0.36 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.09 | MC |
| SRR6168974 | leaf | none (control) | 0.59 | MC |
| SRR6168975 | leaf | none (control) | 0.49 | MC |
| SRR6168981 | leaf | none (control) | 1.49 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.12 | MC |
| SRR4947496 | root | control | 0.48 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.74 | MC |
| SRR1633182 | panicle | WT | 0.59 | MC |
| SRR1633185 | panicle | WT | 0.42 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.54 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.47 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.24 | MC |
| SRR5126147 | root | "mock,1_day" | 0.72 | MC |
| SRR5126148 | root | "mock,1_day" | 0.61 | MC |
| SRR5126149 | root | "mock,1_day" | 0.59 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.66 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126155 | root | "mock,7_days" | 0.63 | MC |
| SRR5126157 | root | "mock,7_days" | 0.50 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.05 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.81 | MC |
| SRR5126167 | root | "mock,14_days" | 0.50 | MC |
| SRR5126169 | root | "mock,14_days" | 0.51 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.46 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.40 | MC |
| SRR1213694 | root | wt | 0.62 | MC |
| SRR4947479 | root | control | 0.46 | MC |
| SRR4947481 | root | control | 0.67 | MC |
| SRR4947483 | root | Al | 0.40 | MC |
| SRR4947494 | root | control | 0.55 | MC |
| SRR4947498 | root | Al | 0.48 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.99 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.24 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.38 | MC |
| SRR6441554 | seedling | wild_type | 0.55 | MC |
| SRR6441555 | seedling | wild_type | 0.76 | MC |
| SRR2154083 | seedling | wt | 0.29 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.26 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.94 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.02 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.76 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.99 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.08 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.29 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.24 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.65 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.71 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.45 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.86 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.60 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.53 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.72 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.44 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.58 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.38 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.88 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.31 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.68 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.68 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.78 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.55 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.92 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.68 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |