| SRR358795 | callus | wt | 6.71 | MC |
| SRR5560727 | caryopsis | wild_type | 0.28 | MC |
| SRR5560728 | caryopsis | wild_type | 0.78 | MC |
| SRR5560729 | caryopsis | wild_type | 0.38 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.59 | MC |
| SRR7265400 | coleoptile | 2dA | 2.16 | MC |
| SRR7265402 | coleoptile | 2dA | 3.77 | MC |
| SRR7265403 | coleoptile | 2dN | 2.63 | MC |
| SRR7265404 | coleoptile | 2dN | 1.97 | MC |
| SRR7265405 | coleoptile | 2dN | 2.19 | MC |
| SRR7265406 | coleoptile | 3dA | 2.98 | MC |
| SRR7265407 | coleoptile | 3dA | 2.28 | MC |
| SRR7265408 | coleoptile | 3dA | 2.34 | MC |
| SRR7265409 | coleoptile | 3dN | 1.06 | MC |
| SRR7265410 | coleoptile | 3dN | 0.47 | MC |
| SRR7265411 | coleoptile | 3dN | 0.71 | MC |
| SRR7265412 | coleoptile | 4dA | 3.33 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.03 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.67 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.49 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.32 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.88 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.37 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.50 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.66 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR7265382 | embryo | 3hA | 1.99 | MC |
| SRR7265383 | embryo | 3hA | 1.29 | MC |
| SRR7265384 | embryo | 3hA | 1.88 | MC |
| SRR7265394 | embryo | 24hA | 1.75 | MC |
| SRR7265395 | embryo | 24hA | 2.71 | MC |
| SRR7265396 | embryo | 24hA | 3.08 | MC |
| SRR7265397 | embryo | 24hN | 5.20 | MC |
| SRR7265398 | embryo | 24hN | 2.33 | MC |
| SRR7265399 | embryo | 24hN | 3.10 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.45 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.99 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.73 | MC |
| SRR8240818 | leaf | wild_type | 0.67 | MC |
| SRR8240819 | leaf | wild_type | 1.11 | MC |
| SRR8240820 | leaf | wild_type | 0.53 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.69 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.75 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.49 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.88 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.85 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.95 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.15 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.55 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.76 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.30 | MC |
| SRR1213692 | leaf | wt | 3.40 | MC |
| SRR6502088 | leaf | control | 0.85 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.66 | MC |
| SRR6502101 | leaf | control | 0.81 | MC |
| SRR6502102 | leaf | control | 0.40 | MC |
| SRR5856932 | leaf | salt | 0.20 | MC |
| SRR5856936 | leaf | salt | 0.15 | MC |
| SRR5856938 | leaf | salt | 0.37 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.12 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.63 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.54 | MC |
| SRR6168973 | leaf | none (control) | 3.51 | MC |
| SRR6168974 | leaf | none (control) | 3.87 | MC |
| SRR6168975 | leaf | none (control) | 2.97 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.77 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR8582889 | panicle | AM | 0.25 | MC |
| SRR8582890 | panicle | AM | 0.73 | MC |
| SRR8582893 | panicle | PM | 0.28 | MC |
| SRR5110429 | panicle | Dawn | 1.90 | MC |
| SRR5110430 | panicle | Dawn | 1.23 | MC |
| SRR5110431 | panicle | Dawn | 2.30 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.77 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.18 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.69 | MC |
| SRR5110445 | panicle | Dusk | 1.00 | MC |
| SRR5110447 | panicle | Dusk | 1.22 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.76 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.40 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.26 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.14 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.84 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.44 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.44 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.08 | MC |
| SRR1633182 | panicle | WT | 4.41 | MC |
| SRR1633185 | panicle | WT | 2.86 | MC |
| SRR5126147 | root | "mock,1_day" | 0.73 | MC |
| SRR5126148 | root | "mock,1_day" | 2.73 | MC |
| SRR5126149 | root | "mock,1_day" | 1.47 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.70 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126153 | root | "mock,7_days" | 1.29 | MC |
| SRR5126155 | root | "mock,7_days" | 0.92 | MC |
| SRR5126157 | root | "mock,7_days" | 0.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.45 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126169 | root | "mock,14_days" | 0.32 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.30 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.19 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.94 | MC |
| SRR6502095 | root | control | 0.85 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.27 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502106 | root | control | 1.14 | MC |
| SRR6502107 | root | control | 0.40 | MC |
| SRR6502108 | root | control | 1.10 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.27 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.87 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.56 | MC |
| SRR6441555 | seedling | wild_type | 2.79 | MC |
| SRR2154087 | seedling | wt | 3.69 | MC |
| SRR3098741 | seedling | wt | 0.54 | MC |
| SRR3098742 | seedling | wt | 2.42 | MC |
| SRR3098743 | seedling | wt | 0.97 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.70 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.51 | MC |
| SRR1944583 | seedling | no_treatment | 1.01 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.05 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.17 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.63 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.12 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.75 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.74 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.90 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.44 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.57 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.79 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.83 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.09 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.62 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.63 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.44 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.67 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.71 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.70 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.84 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.28 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.80 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.39 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.57 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.64 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.65 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.35 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.03 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.12 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.53 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.82 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.19 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.70 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.28 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.30 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.11 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.85 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.05 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.26 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.38 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.13 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.06 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.32 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.30 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.60 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.44 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.99 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.67 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.70 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.51 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.53 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.18 | MC |