| SRR358795 | callus | wt | 1.72 | MC |
| SRR5560727 | caryopsis | wild_type | 0.52 | MC |
| SRR5560728 | caryopsis | wild_type | 0.51 | MC |
| SRR5560729 | caryopsis | wild_type | 0.40 | MC |
| SRR4947495 | root | control | 3.05 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.98 | MC |
| SRR7265407 | coleoptile | 3dA | 3.03 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.47 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.37 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.26 | MC |
| SRR7265376 | embryo | 1hA | 1.63 | MC |
| SRR7265377 | embryo | 1hA | 0.70 | MC |
| SRR7265378 | embryo | 1hA | 1.25 | MC |
| SRR7265379 | embryo | 1hN | 0.77 | MC |
| SRR7265380 | embryo | 1hN | 1.84 | MC |
| SRR7265381 | embryo | 1hN | 1.02 | MC |
| SRR7265382 | embryo | 3hA | 2.86 | MC |
| SRR7265383 | embryo | 3hA | 2.84 | MC |
| SRR7265384 | embryo | 3hA | 1.90 | MC |
| SRR7265385 | embryo | 3hN | 0.80 | MC |
| SRR7265386 | embryo | 3hN | 0.75 | MC |
| SRR7265387 | embryo | 3hN | 0.75 | MC |
| SRR2338868 | endosprem | high_temperature | 0.51 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.91 | MC |
| SRR1213691 | flower | wt | 1.69 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.20 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.50 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.30 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.78 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.59 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.11 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.52 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.52 | MC |
| SRR1761528 | leaf | drought | 0.52 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.87 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.03 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.09 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.61 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.56 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR5856933 | leaf | control | 2.18 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168979 | leaf | none (control) | 0.23 | MC |
| SRR6168980 | leaf | none (control) | 0.26 | MC |
| SRR6168981 | leaf | none (control) | 0.53 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.88 | MC |
| SRR5110429 | panicle | Dawn | 2.35 | MC |
| SRR5110430 | panicle | Dawn | 0.60 | MC |
| SRR5110431 | panicle | Dawn | 2.11 | MC |
| SRR4947496 | root | control | 3.16 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.50 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.13 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.63 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.11 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.47 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.23 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.89 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.74 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.75 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.77 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.54 | MC |
| SRR5110445 | panicle | Dusk | 1.04 | MC |
| SRR5110446 | panicle | Dusk | 1.78 | MC |
| SRR5110447 | panicle | Dusk | 0.98 | MC |
| SRR5110448 | panicle | Dusk | 1.83 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.41 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.98 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.78 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.58 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.34 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.91 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.80 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.50 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.60 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.61 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.33 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.60 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.45 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.08 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.42 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.94 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.25 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.20 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.71 | MC |
| SRR5126155 | root | "mock,7_days" | 3.93 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.67 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.76 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.31 | MC |
| SRR5126167 | root | "mock,14_days" | 1.73 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.75 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.63 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.90 | MC |
| SRR4947478 | root | control | 3.33 | MC |
| SRR4947479 | root | control | 2.81 | MC |
| SRR4947480 | root | control | 3.32 | MC |
| SRR4947482 | root | Al | 1.59 | MC |
| SRR4947483 | root | Al | 1.07 | MC |
| SRR4947484 | root | Al | 4.26 | MC |
| SRR4947485 | root | Al | 4.12 | MC |
| SRR4947488 | root | control | 3.96 | MC |
| SRR4947489 | root | control | 3.75 | MC |
| SRR4947490 | root | Al | 3.67 | MC |
| SRR4947491 | root | Al | 2.84 | MC |
| SRR4947492 | root | Al | 3.96 | MC |
| SRR4947493 | root | Al | 2.68 | MC |
| SRR4947494 | root | control | 2.45 | MC |
| SRR4947497 | root | control | 3.82 | MC |
| SRR4947499 | root | Al | 1.27 | MC |
| SRR4947500 | root | Al | 2.19 | MC |
| SRR4947501 | root | Al | 2.06 | MC |
| SRR4947502 | root | control | 1.53 | MC |
| SRR4947503 | root | control | 3.24 | MC |
| SRR4947504 | root | control | 2.29 | MC |
| SRR4947505 | root | control | 3.03 | MC |
| SRR4947506 | root | Al | 2.07 | MC |
| SRR4947507 | root | Al | 0.72 | MC |
| SRR4947508 | root | Al | 2.21 | MC |
| SRR4947509 | root | Al | 4.87 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.78 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.15 | MC |
| SRR6502094 | root | control | 3.39 | MC |
| SRR6502095 | root | control | 4.45 | MC |
| SRR6502096 | root | control | 4.54 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.93 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.35 | MC |
| SRR6502106 | root | control | 2.73 | MC |
| SRR6502107 | root | control | 2.69 | MC |
| SRR6502108 | root | control | 1.66 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.81 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.86 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.10 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.66 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.15 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.22 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR2154086 | seedling | wt | 2.14 | MC |
| SRR2154082 | seedling | wt | 1.09 | MC |
| SRR2154083 | seedling | wt | 0.86 | MC |
| SRR2154084 | seedling | wt | 0.73 | MC |
| SRR2154085 | seedling | wt | 0.71 | MC |
| SRR2154087 | seedling | wt | 1.96 | MC |
| SRR3098741 | seedling | wt | 0.35 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.11 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.43 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.50 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.87 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.89 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.13 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.03 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.89 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.73 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.80 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.49 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.69 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.27 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.98 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.13 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.30 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.97 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.63 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.84 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.26 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.77 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.61 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.07 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.84 | MC |