| SRR4457255 | 2nd_leaf | DAH20 | 4.63 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.37 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.77 | MC |
| SRR3745125 | anther | wt | 4.68 | MC |
| SRR3745126 | anther | wt | 4.84 | MC |
| SRR3745127 | anther | wt | 3.04 | MC |
| SRR7265414 | coleoptile | 4dA | 2.53 | MC |
| SRR7265417 | coleoptile | 4dN | 3.15 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.85 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.89 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.77 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.84 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.63 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.11 | MC |
| SRR8240824 | leaf | wild_type | 2.28 | MC |
| SRR8240825 | leaf | wild_type | 1.94 | MC |
| SRR8240826 | leaf | wild_type | 1.35 | MC |
| SRR8240818 | leaf | wild_type | 0.90 | MC |
| SRR8240819 | leaf | wild_type | 1.16 | MC |
| SRR8240820 | leaf | wild_type | 1.55 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.78 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.09 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.02 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.02 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.06 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.29 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.29 | MC |
| SRR1761530 | leaf | control | 5.29 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.17 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.62 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.39 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.98 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.97 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.59 | MC |
| SRR5856928 | leaf | control | 2.01 | MC |
| SRR5856929 | leaf | control | 1.15 | MC |
| SRR5856930 | leaf | salt | 1.68 | MC |
| SRR5856931 | leaf | salt | 1.44 | MC |
| SRR5856933 | leaf | control | 2.14 | MC |
| SRR5856934 | leaf | control | 1.47 | MC |
| SRR6168979 | leaf | none (control) | 1.50 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.08 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.62 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.95 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.38 | MC |
| SRR5126147 | root | "mock,1_day" | 0.79 | MC |
| SRR5126149 | root | "mock,1_day" | 0.59 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126153 | root | "mock,7_days" | 0.90 | MC |
| SRR5126155 | root | "mock,7_days" | 1.58 | MC |
| SRR5126157 | root | "mock,7_days" | 3.47 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.81 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.28 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.86 | MC |
| SRR5126165 | root | "mock,14_days" | 0.64 | MC |
| SRR5126167 | root | "mock,14_days" | 0.89 | MC |
| SRR5126169 | root | "mock,14_days" | 1.96 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.75 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.76 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.45 | MC |
| SRR1213694 | root | wt | 2.28 | MC |
| SRR4947479 | root | control | 0.85 | MC |
| SRR4947480 | root | control | 0.68 | MC |
| SRR4947482 | root | Al | 1.20 | MC |
| SRR4947483 | root | Al | 0.85 | MC |
| SRR4947484 | root | Al | 0.99 | MC |
| SRR4947487 | root | control | 0.45 | MC |
| SRR4947489 | root | control | 0.91 | MC |
| SRR4947490 | root | Al | 1.80 | MC |
| SRR4947491 | root | Al | 1.85 | MC |
| SRR4947492 | root | Al | 0.60 | MC |
| SRR4947494 | root | control | 1.17 | MC |
| SRR4947497 | root | control | 1.66 | MC |
| SRR4947498 | root | Al | 1.21 | MC |
| SRR4947499 | root | Al | 1.09 | MC |
| SRR4947500 | root | Al | 0.91 | MC |
| SRR4947501 | root | Al | 1.84 | MC |
| SRR4947503 | root | control | 0.85 | MC |
| SRR4947504 | root | control | 0.64 | MC |
| SRR4947505 | root | control | 0.88 | MC |
| SRR4947507 | root | Al | 1.30 | MC |
| SRR4947508 | root | Al | 0.89 | MC |
| SRR4947509 | root | Al | 1.29 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.32 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.35 | MC |
| SRR6502094 | root | control | 3.54 | MC |
| SRR6502095 | root | control | 2.94 | MC |
| SRR6502096 | root | control | 1.10 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.16 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502107 | root | control | 3.49 | MC |
| SRR6502108 | root | control | 2.21 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.55 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.86 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.18 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.35 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.61 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.93 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.37 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.25 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.07 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.08 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.75 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.74 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.40 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.09 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.65 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.60 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.38 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.05 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.10 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.71 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.48 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.53 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.07 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.92 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.43 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.80 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.30 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.85 | MC |