| SRR4457249 | 2nd_leaf | DAH4 | 0.77 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.93 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.38 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.51 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.45 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.48 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.84 | MC |
| SRR3745125 | anther | wt | 1.04 | MC |
| SRR3745126 | anther | wt | 1.47 | MC |
| SRR3745127 | anther | wt | 0.84 | MC |
| SRR358795 | callus | wt | 1.68 | MC |
| SRR358796 | callus | wt | 2.36 | MC |
| SRR358797 | callus | wt | 1.89 | MC |
| SRR358798 | callus | wt | 2.27 | MC |
| SRR5560727 | caryopsis | wild_type | 2.08 | MC |
| SRR5560728 | caryopsis | wild_type | 1.05 | MC |
| SRR5560729 | caryopsis | wild_type | 1.38 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.24 | MC |
| SRR4947495 | root | control | 2.30 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR7265400 | coleoptile | 2dA | 0.56 | MC |
| SRR7265401 | coleoptile | 2dA | 3.45 | MC |
| SRR7265403 | coleoptile | 2dN | 0.61 | MC |
| SRR7265404 | coleoptile | 2dN | 0.69 | MC |
| SRR7265406 | coleoptile | 3dA | 0.64 | MC |
| SRR7265409 | coleoptile | 3dN | 2.28 | MC |
| SRR7265411 | coleoptile | 3dN | 1.57 | MC |
| SRR7265412 | coleoptile | 4dA | 0.58 | MC |
| SRR7265415 | coleoptile | 4dN | 1.47 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.89 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.74 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.65 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.10 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR7265389 | embryo | 12hA | 0.70 | MC |
| SRR7265390 | embryo | 12hA | 0.78 | MC |
| SRR7265394 | embryo | 24hA | 0.76 | MC |
| SRR7265395 | embryo | 24hA | 0.79 | MC |
| SRR7265396 | embryo | 24hA | 0.67 | MC |
| SRR7265399 | embryo | 24hN | 0.61 | MC |
| SRR2338866 | endosprem | control | 1.96 | MC |
| SRR2338868 | endosprem | high_temperature | 1.77 | MC |
| SRR2338869 | endosprem | high_temperature | 1.18 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.61 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.04 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.13 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.47 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.57 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.94 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.40 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.60 | MC |
| SRR8060835 | leaf | wild_type | 0.46 | MC |
| SRR8240826 | leaf | wild_type | 0.33 | MC |
| SRR8240818 | leaf | wild_type | 0.44 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.82 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.59 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.52 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.56 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.51 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.31 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.02 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.15 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.87 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.48 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.95 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.15 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.24 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.19 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.73 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.48 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.78 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.95 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.68 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.78 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.95 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.68 | MC |
| SRR1761528 | leaf | drought | 0.78 | MC |
| SRR1761530 | leaf | control | 1.95 | MC |
| SRR1761531 | leaf | control | 1.68 | MC |
| SRR504365 | leaf | wt | 1.49 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.70 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR6417967 | leaf | H2O_control | 1.08 | MC |
| SRR6417969 | leaf | H2O_control | 0.65 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.01 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.49 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.22 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.62 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.57 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.80 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.80 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.21 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.35 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.87 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.48 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.58 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.31 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.55 | MC |
| SRR6502088 | leaf | control | 2.81 | MC |
| SRR6502089 | leaf | control | 1.41 | MC |
| SRR6502090 | leaf | control | 1.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.23 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.47 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.91 | MC |
| SRR6502100 | leaf | control | 1.31 | MC |
| SRR6502101 | leaf | control | 1.11 | MC |
| SRR6502102 | leaf | control | 1.37 | MC |
| SRR5856927 | leaf | control | 0.21 | MC |
| SRR5856929 | leaf | control | 0.90 | MC |
| SRR5856930 | leaf | salt | 1.67 | MC |
| SRR5856933 | leaf | control | 0.71 | MC |
| SRR5856935 | leaf | control | 1.06 | MC |
| SRR5856936 | leaf | salt | 0.70 | MC |
| SRR5856937 | leaf | salt | 0.99 | MC |
| SRR5856938 | leaf | salt | 1.12 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.42 | MC |
| SRR5110431 | panicle | Dawn | 1.25 | MC |
| SRR5110432 | panicle | Dawn | 1.83 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.69 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.49 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.49 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.69 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.66 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.75 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.78 | MC |
| SRR5110445 | panicle | Dusk | 3.43 | MC |
| SRR5110446 | panicle | Dusk | 3.69 | MC |
| SRR5110447 | panicle | Dusk | 4.19 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.07 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.30 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.55 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.30 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.30 | MC |
| SRR1633182 | panicle | WT | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 1.17 | MC |
| SRR5126148 | root | "mock,1_day" | 0.46 | MC |
| SRR5126149 | root | "mock,1_day" | 1.31 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126153 | root | "mock,7_days" | 1.91 | MC |
| SRR5126155 | root | "mock,7_days" | 1.95 | MC |
| SRR5126157 | root | "mock,7_days" | 3.94 | MC |
| SRR5126165 | root | "mock,14_days" | 1.27 | MC |
| SRR5126167 | root | "mock,14_days" | 1.19 | MC |
| SRR1213695 | root | wt | 0.22 | MC |
| SRR4947478 | root | control | 3.14 | MC |
| SRR4947479 | root | control | 1.31 | MC |
| SRR4947480 | root | control | 1.87 | MC |
| SRR4947482 | root | Al | 3.51 | MC |
| SRR4947485 | root | Al | 0.90 | MC |
| SRR4947489 | root | control | 1.26 | MC |
| SRR4947490 | root | Al | 2.31 | MC |
| SRR4947491 | root | Al | 1.90 | MC |
| SRR4947492 | root | Al | 1.69 | MC |
| SRR4947497 | root | control | 3.31 | MC |
| SRR4947498 | root | Al | 5.41 | MC |
| SRR4947501 | root | Al | 1.59 | MC |
| SRR4947507 | root | Al | 4.10 | MC |
| SRR4947508 | root | Al | 1.49 | MC |
| SRR6502108 | root | control | 3.46 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.80 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.52 | MC |
| SRR2154086 | seedling | wt | 1.98 | MC |
| SRR3098741 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.99 | MC |
| SRR3098743 | seedling | wt | 0.17 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.38 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.93 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.40 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.96 | MC |
| SRR1944583 | seedling | no_treatment | 4.12 | MC |
| SRR358791 | seedling | wt | 1.47 | MC |
| SRR358792 | seedling | wt | 1.76 | MC |
| SRR358793 | seedling | wt | 1.51 | MC |
| SRR358794 | seedling | wt | 0.78 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.82 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.78 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.03 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.47 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.49 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.83 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.74 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.69 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.43 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.40 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.96 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.99 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.05 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.81 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.56 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.54 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.16 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.28 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.25 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.11 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.68 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.19 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.34 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.52 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.56 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.37 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.38 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.82 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.05 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.62 | MC |