| SRR4457251 | 2nd_leaf | DAH4 | 0.28 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.43 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.89 | MC |
| SRR5560727 | caryopsis | wild_type | 0.30 | MC |
| SRR5560728 | caryopsis | wild_type | 0.59 | MC |
| SRR7265405 | coleoptile | 2dN | 0.36 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.67 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.38 | MC |
| SRR8240824 | leaf | wild_type | 0.95 | MC |
| SRR8240825 | leaf | wild_type | 1.90 | MC |
| SRR8240826 | leaf | wild_type | 1.07 | MC |
| SRR8240818 | leaf | wild_type | 0.76 | MC |
| SRR8240819 | leaf | wild_type | 0.76 | MC |
| SRR8240820 | leaf | wild_type | 0.67 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.35 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.48 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.48 | MC |
| SRR1761529 | leaf | drought | 0.48 | MC |
| SRR504365 | leaf | wt | 0.51 | MC |
| SRR6417969 | leaf | H2O_control | 0.59 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.27 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.28 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.93 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.96 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.79 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.93 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.55 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR1213692 | leaf | wt | 0.57 | MC |
| SRR1213693 | leaf | wt | 0.51 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502090 | leaf | control | 0.83 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.85 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502100 | leaf | control | 1.09 | MC |
| SRR6502101 | leaf | control | 0.87 | MC |
| SRR6502102 | leaf | control | 0.45 | MC |
| SRR6168973 | leaf | none (control) | 1.36 | MC |
| SRR6168974 | leaf | none (control) | 1.17 | MC |
| SRR6168975 | leaf | none (control) | 0.91 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.62 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.60 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR8582891 | panicle | PM | 0.57 | MC |
| SRR8582893 | panicle | PM | 0.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.30 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.52 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.61 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 0.40 | MC |
| SRR5126157 | root | "mock,7_days" | 0.43 | MC |
| SRR5126165 | root | "mock,14_days" | 0.64 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR1213695 | root | wt | 0.47 | MC |
| SRR4947492 | root | Al | 0.74 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502095 | root | control | 0.77 | MC |
| SRR6502096 | root | control | 0.71 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.28 | MC |
| SRR6502108 | root | control | 0.55 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.36 | MC |
| SRR6441554 | seedling | wild_type | 0.50 | MC |
| SRR6441555 | seedling | wild_type | 0.98 | MC |
| SRR3098741 | seedling | wt | 0.46 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR3098743 | seedling | wt | 0.18 | MC |
| SRR1944583 | seedling | no_treatment | 0.96 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.64 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.86 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.13 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.20 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.52 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.93 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.39 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.34 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.96 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.42 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.25 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.75 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.78 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.56 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.27 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.57 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.79 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.73 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.97 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.71 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.81 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.03 | MC |