| SRR3745125 | anther | wt | 2.19 | MC |
| SRR3745126 | anther | wt | 1.07 | MC |
| SRR3745127 | anther | wt | 0.56 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.00 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR2338868 | endosprem | high_temperature | 0.81 | MC |
| SRR2338869 | endosprem | high_temperature | 0.53 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.35 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.48 | MC |
| SRR1213691 | flower | wt | 0.50 | MC |
| SRR8240819 | leaf | wild_type | 0.21 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.48 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.48 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.78 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.61 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.95 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.80 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.59 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.69 | MC |
| SRR1761528 | leaf | drought | 0.69 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.52 | MC |
| SRR6417967 | leaf | H2O_control | 0.49 | MC |
| SRR6417969 | leaf | H2O_control | 0.60 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.26 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.58 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.43 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.94 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.30 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR1213693 | leaf | wt | 0.34 | MC |
| SRR6168973 | leaf | none (control) | 0.29 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.80 | MC |
| SRR8582888 | panicle | AM | 0.71 | MC |
| SRR8582889 | panicle | AM | 0.89 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.35 | MC |
| SRR6502094 | root | control | 0.66 | MC |
| SRR6502095 | root | control | 0.64 | MC |
| SRR6441554 | seedling | wild_type | 0.25 | MC |
| SRR2154087 | seedling | wt | 0.38 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.25 | MC |
| SRR1944583 | seedling | no_treatment | 0.53 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.57 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.52 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.91 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.12 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.53 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.29 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.52 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.43 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.31 | MC |