| SRR4457249 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.09 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.33 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.93 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.29 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.96 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.54 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.52 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.88 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.40 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.91 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.83 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.99 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.23 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.97 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.11 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.52 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.41 | MC |
| SRR3745125 | anther | wt | 5.63 | MC |
| SRR3745126 | anther | wt | 4.83 | MC |
| SRR3745127 | anther | wt | 5.24 | MC |
| SRR5560727 | caryopsis | wild_type | 2.55 | MC |
| SRR5560728 | caryopsis | wild_type | 4.52 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.27 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.98 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.63 | MC |
| SRR4947495 | root | control | 3.14 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.22 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.92 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.13 | MC |
| SRR2338866 | endosprem | control | 2.15 | MC |
| SRR2338869 | endosprem | high_temperature | 2.98 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.45 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.94 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.60 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.98 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.97 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.99 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.98 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.81 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.01 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.50 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.79 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.38 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.22 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.95 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.00 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.10 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.74 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.57 | MC |
| SRR1213691 | flower | wt | 3.76 | MC |
| SRR8060836 | leaf | wild_type | 3.08 | MC |
| SRR8060837 | leaf | wild_type | 1.56 | MC |
| SRR8240824 | leaf | wild_type | 0.91 | MC |
| SRR8240826 | leaf | wild_type | 0.74 | MC |
| SRR8240818 | leaf | wild_type | 0.71 | MC |
| SRR8240819 | leaf | wild_type | 0.32 | MC |
| SRR8240820 | leaf | wild_type | 1.13 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.51 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.46 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.27 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.40 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.68 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.07 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.47 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.44 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.32 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.88 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.68 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.86 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.55 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.05 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.28 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.42 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.01 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.63 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.42 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.10 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.33 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.60 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.15 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.48 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.82 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.71 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.67 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.40 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.06 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.89 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.65 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.39 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.76 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.54 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.76 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.54 | MC |
| SRR1761530 | leaf | control | 4.76 | MC |
| SRR1761531 | leaf | control | 5.54 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.27 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.38 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.24 | MC |
| SRR6417968 | leaf | H2O_control | 0.59 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.74 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.81 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.98 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.14 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.57 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.55 | MC |
| SRR5856929 | leaf | control | 1.82 | MC |
| SRR5856930 | leaf | salt | 0.85 | MC |
| SRR5856931 | leaf | salt | 1.62 | MC |
| SRR5856936 | leaf | salt | 1.59 | MC |
| SRR5856937 | leaf | salt | 0.99 | MC |
| SRR5856938 | leaf | salt | 1.64 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.66 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.80 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.07 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.05 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.34 | MC |
| SRR6168973 | leaf | none (control) | 2.65 | MC |
| SRR6168974 | leaf | none (control) | 3.02 | MC |
| SRR6168975 | leaf | none (control) | 2.56 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.18 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR6168979 | leaf | none (control) | 1.72 | MC |
| SRR6168980 | leaf | none (control) | 1.46 | MC |
| SRR6168981 | leaf | none (control) | 2.26 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.54 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.18 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.67 | MC |
| SRR8582888 | panicle | AM | 0.61 | MC |
| SRR8582889 | panicle | AM | 1.05 | MC |
| SRR8582890 | panicle | AM | 0.31 | MC |
| SRR8582891 | panicle | PM | 1.37 | MC |
| SRR8582892 | panicle | PM | 2.24 | MC |
| SRR8582893 | panicle | PM | 0.73 | MC |
| SRR4947496 | root | control | 3.42 | MC |
| SRR5110445 | panicle | Dusk | 4.31 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.75 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.36 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.81 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.52 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.08 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.76 | MC |
| SRR5126149 | root | "mock,1_day" | 4.59 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.41 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.93 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.05 | MC |
| SRR5126157 | root | "mock,7_days" | 4.38 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.81 | MC |
| SRR5126167 | root | "mock,14_days" | 3.86 | MC |
| SRR5126169 | root | "mock,14_days" | 3.90 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.29 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.92 | MC |
| SRR4947478 | root | control | 4.60 | MC |
| SRR4947479 | root | control | 3.26 | MC |
| SRR4947481 | root | control | 4.11 | MC |
| SRR4947482 | root | Al | 3.23 | MC |
| SRR4947485 | root | Al | 2.82 | MC |
| SRR4947491 | root | Al | 5.23 | MC |
| SRR4947492 | root | Al | 2.49 | MC |
| SRR4947493 | root | Al | 4.81 | MC |
| SRR4947494 | root | control | 4.57 | MC |
| SRR4947497 | root | control | 5.51 | MC |
| SRR4947500 | root | Al | 3.37 | MC |
| SRR4947503 | root | control | 1.95 | MC |
| SRR4947504 | root | control | 4.08 | MC |
| SRR4947505 | root | control | 2.67 | MC |
| SRR4947506 | root | Al | 1.12 | MC |
| SRR4947509 | root | Al | 3.46 | MC |
| SRR6441554 | seedling | wild_type | 1.46 | MC |
| SRR6441555 | seedling | wild_type | 1.49 | MC |
| SRR3098741 | seedling | wt | 2.00 | MC |
| SRR3098742 | seedling | wt | 1.70 | MC |
| SRR3098743 | seedling | wt | 1.72 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.18 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.64 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.87 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.11 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.38 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.80 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.04 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.83 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.82 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.34 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.24 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.05 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.52 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.01 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.40 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.45 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.03 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.67 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.90 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.96 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.01 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.52 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.65 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.53 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.07 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.55 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.21 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.76 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.67 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.16 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.72 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.25 | MC |