| SRR3745125 | anther | wt | 1.75 | MC |
| SRR3745126 | anther | wt | 2.50 | MC |
| SRR3745127 | anther | wt | 2.03 | MC |
| SRR5560727 | caryopsis | wild_type | 0.78 | MC |
| SRR5560729 | caryopsis | wild_type | 0.35 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.49 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR2338868 | endosprem | high_temperature | 0.72 | MC |
| SRR2338869 | endosprem | high_temperature | 0.75 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.50 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.67 | MC |
| SRR1213691 | flower | wt | 1.38 | MC |
| SRR8240824 | leaf | wild_type | 0.40 | MC |
| SRR8240826 | leaf | wild_type | 0.49 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.36 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.28 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.26 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.60 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.32 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.90 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.52 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.32 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.58 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.54 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.58 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.48 | MC |
| SRR1761530 | leaf | control | 0.65 | MC |
| SRR1761531 | leaf | control | 0.54 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417969 | leaf | H2O_control | 0.47 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.42 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.21 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.67 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.53 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.66 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.23 | MC |
| SRR8582888 | panicle | AM | 1.05 | MC |
| SRR8582889 | panicle | AM | 0.77 | MC |
| SRR8582890 | panicle | AM | 0.88 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.35 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.25 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126167 | root | "mock,14_days" | 0.36 | MC |
| SRR1213695 | root | wt | 0.20 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.46 | MC |
| SRR6441555 | seedling | wild_type | 0.32 | MC |
| SRR3098741 | seedling | wt | 0.17 | MC |
| SRR3098742 | seedling | wt | 0.37 | MC |
| SRR3098743 | seedling | wt | 0.49 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.58 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.53 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.23 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.05 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.30 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.83 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.00 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.21 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.67 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.41 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.67 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.48 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.74 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.37 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.49 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.48 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.55 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.87 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.69 | MC |