| SRR4457249 | 2nd_leaf | DAH4 | 1.72 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.02 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.16 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.58 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.64 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.45 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.01 | MC |
| SRR6320473 | carpel | wt | 2.34 | MC |
| SRR6320498 | carpel | wt | 1.64 | MC |
| SRR5560728 | caryopsis | wild_type | 0.77 | MC |
| SRR5560729 | caryopsis | wild_type | 0.37 | MC |
| SRR4947495 | root | control | 3.88 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.36 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.66 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.99 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.21 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.42 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR976168 | flag_leaf | wild_type | 0.46 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.78 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.63 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.50 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.44 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.39 | MC |
| SRR1213691 | flower | wt | 0.66 | MC |
| SRR8060835 | leaf | wild_type | 0.66 | MC |
| SRR8060836 | leaf | wild_type | 0.29 | MC |
| SRR8060837 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.36 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.29 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR504365 | leaf | wt | 0.83 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.66 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR1213693 | leaf | wt | 0.47 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.63 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.08 | MC |
| SRR6502088 | leaf | control | 0.56 | MC |
| SRR6502089 | leaf | control | 0.61 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.76 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.46 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502100 | leaf | control | 0.75 | MC |
| SRR6502101 | leaf | control | 0.59 | MC |
| SRR6502102 | leaf | control | 0.97 | MC |
| SRR5856927 | leaf | control | 0.99 | MC |
| SRR5856928 | leaf | control | 0.96 | MC |
| SRR5856929 | leaf | control | 0.82 | MC |
| SRR5856931 | leaf | salt | 0.38 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856934 | leaf | control | 0.34 | MC |
| SRR5856935 | leaf | control | 0.46 | MC |
| SRR5856937 | leaf | salt | 0.54 | MC |
| SRR5856938 | leaf | salt | 0.35 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.78 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.76 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.34 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.90 | MC |
| SRR6168973 | leaf | none (control) | 2.63 | MC |
| SRR6168974 | leaf | none (control) | 1.98 | MC |
| SRR6168975 | leaf | none (control) | 1.57 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR6168980 | leaf | none (control) | 0.60 | MC |
| SRR6168981 | leaf | none (control) | 1.59 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.83 | MC |
| SRR8582890 | panicle | AM | 0.33 | MC |
| SRR5110429 | panicle | Dawn | 2.66 | MC |
| SRR5110430 | panicle | Dawn | 1.72 | MC |
| SRR5110431 | panicle | Dawn | 1.52 | MC |
| SRR5110432 | panicle | Dawn | 4.03 | MC |
| SRR4947496 | root | control | 1.15 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.64 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.24 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.47 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.19 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.83 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.71 | MC |
| SRR5110446 | panicle | Dusk | 2.29 | MC |
| SRR5110447 | panicle | Dusk | 1.19 | MC |
| SRR5110448 | panicle | Dusk | 1.42 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.87 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.41 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.15 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.21 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.79 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.71 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.42 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.28 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.29 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.24 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.85 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.92 | MC |
| SRR5126149 | root | "mock,1_day" | 1.18 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.85 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.23 | MC |
| SRR5126155 | root | "mock,7_days" | 0.29 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.38 | MC |
| SRR4947478 | root | control | 3.29 | MC |
| SRR4947479 | root | control | 1.50 | MC |
| SRR4947482 | root | Al | 2.74 | MC |
| SRR4947484 | root | Al | 0.95 | MC |
| SRR4947487 | root | control | 4.37 | MC |
| SRR4947488 | root | control | 0.56 | MC |
| SRR4947490 | root | Al | 2.51 | MC |
| SRR4947491 | root | Al | 1.69 | MC |
| SRR4947493 | root | Al | 0.51 | MC |
| SRR4947494 | root | control | 2.83 | MC |
| SRR4947498 | root | Al | 2.01 | MC |
| SRR4947499 | root | Al | 1.37 | MC |
| SRR4947502 | root | control | 3.41 | MC |
| SRR4947503 | root | control | 2.28 | MC |
| SRR4947504 | root | control | 0.53 | MC |
| SRR4947505 | root | control | 0.54 | MC |
| SRR4947506 | root | Al | 1.93 | MC |
| SRR4947507 | root | Al | 2.24 | MC |
| SRR4947509 | root | Al | 0.54 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.24 | MC |
| SRR6502094 | root | control | 2.39 | MC |
| SRR6502095 | root | control | 1.67 | MC |
| SRR6502096 | root | control | 2.93 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.35 | MC |
| SRR6502106 | root | control | 1.89 | MC |
| SRR6502107 | root | control | 1.41 | MC |
| SRR6502108 | root | control | 1.03 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR2154086 | seedling | wt | 0.53 | MC |
| SRR2154082 | seedling | wt | 1.07 | MC |
| SRR2154083 | seedling | wt | 1.56 | MC |
| SRR2154085 | seedling | wt | 0.46 | MC |
| SRR2154087 | seedling | wt | 0.54 | MC |
| SRR3098742 | seedling | wt | 0.20 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.84 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.36 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.05 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.33 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.80 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.78 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.92 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.91 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.33 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.11 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.45 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.91 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.98 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.42 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.48 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.95 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.73 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.68 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.58 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.99 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.33 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.41 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.27 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.51 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.27 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.13 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.76 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |