| SRR4457254 | 2nd_leaf | DAH12 | 1.05 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.36 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.07 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.13 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.65 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.07 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.90 | MC |
| SRR5560727 | caryopsis | wild_type | 0.50 | MC |
| SRR5560728 | caryopsis | wild_type | 0.93 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.07 | MC |
| SRR4947495 | root | control | 0.50 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.23 | MC |
| SRR7265400 | coleoptile | 2dA | 0.58 | MC |
| SRR7265401 | coleoptile | 2dA | 0.29 | MC |
| SRR7265402 | coleoptile | 2dA | 0.46 | MC |
| SRR7265403 | coleoptile | 2dN | 0.42 | MC |
| SRR7265404 | coleoptile | 2dN | 0.39 | MC |
| SRR7265405 | coleoptile | 2dN | 0.90 | MC |
| SRR7265407 | coleoptile | 3dA | 0.65 | MC |
| SRR7265411 | coleoptile | 3dN | 1.36 | MC |
| SRR7265412 | coleoptile | 4dA | 0.46 | MC |
| SRR7265413 | coleoptile | 4dA | 0.78 | MC |
| SRR7265414 | coleoptile | 4dA | 0.67 | MC |
| SRR7265417 | coleoptile | 4dN | 0.45 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.52 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.51 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.28 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.83 | MC |
| SRR7265376 | embryo | 1hA | 0.72 | MC |
| SRR7265382 | embryo | 3hA | 0.45 | MC |
| SRR7265390 | embryo | 12hA | 1.00 | MC |
| SRR7265391 | embryo | 12hN | 0.58 | MC |
| SRR7265393 | embryo | 12hN | 2.12 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.65 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.84 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.32 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.22 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.28 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.22 | MC |
| SRR1213691 | flower | wt | 0.35 | MC |
| SRR8060836 | leaf | wild_type | 0.23 | MC |
| SRR8240824 | leaf | wild_type | 0.67 | MC |
| SRR8240819 | leaf | wild_type | 0.60 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.23 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.09 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.35 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.15 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.63 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.59 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.00 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.77 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.09 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.33 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.42 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.42 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.98 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.65 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.05 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.87 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.05 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.87 | MC |
| SRR1761528 | leaf | drought | 1.05 | MC |
| SRR1761529 | leaf | drought | 2.87 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.64 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.58 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.56 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.38 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.95 | MC |
| SRR1213692 | leaf | wt | 0.71 | MC |
| SRR1213693 | leaf | wt | 0.87 | MC |
| SRR5856927 | leaf | control | 1.10 | MC |
| SRR5856928 | leaf | control | 0.38 | MC |
| SRR5856929 | leaf | control | 1.46 | MC |
| SRR5856932 | leaf | salt | 1.31 | MC |
| SRR5856933 | leaf | control | 1.96 | MC |
| SRR5856934 | leaf | control | 0.60 | MC |
| SRR5856938 | leaf | salt | 0.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.64 | MC |
| SRR8582889 | panicle | AM | 0.46 | MC |
| SRR5110430 | panicle | Dawn | 0.99 | MC |
| SRR5110431 | panicle | Dawn | 0.43 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.29 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.72 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.67 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.13 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.66 | MC |
| SRR5110447 | panicle | Dusk | 0.85 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.45 | MC |
| SRR1633185 | panicle | WT | 5.18 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.54 | MC |
| SRR5126149 | root | "mock,1_day" | 1.21 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.67 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.49 | MC |
| SRR5126153 | root | "mock,7_days" | 0.69 | MC |
| SRR5126155 | root | "mock,7_days" | 0.37 | MC |
| SRR5126157 | root | "mock,7_days" | 2.19 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.06 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126165 | root | "mock,14_days" | 0.39 | MC |
| SRR5126167 | root | "mock,14_days" | 1.88 | MC |
| SRR5126169 | root | "mock,14_days" | 1.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.99 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.90 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.93 | MC |
| SRR1213694 | root | wt | 0.24 | MC |
| SRR1213695 | root | wt | 0.25 | MC |
| SRR4947480 | root | control | 4.08 | MC |
| SRR4947481 | root | control | 1.80 | MC |
| SRR4947482 | root | Al | 0.34 | MC |
| SRR4947485 | root | Al | 0.88 | MC |
| SRR4947487 | root | control | 0.53 | MC |
| SRR4947488 | root | control | 1.22 | MC |
| SRR4947489 | root | control | 2.60 | MC |
| SRR4947490 | root | Al | 0.67 | MC |
| SRR4947491 | root | Al | 0.83 | MC |
| SRR4947492 | root | Al | 3.28 | MC |
| SRR4947493 | root | Al | 1.04 | MC |
| SRR4947498 | root | Al | 1.06 | MC |
| SRR4947500 | root | Al | 2.14 | MC |
| SRR4947501 | root | Al | 1.21 | MC |
| SRR4947502 | root | control | 0.84 | MC |
| SRR4947504 | root | control | 2.71 | MC |
| SRR4947505 | root | control | 1.49 | MC |
| SRR4947506 | root | Al | 0.69 | MC |
| SRR4947507 | root | Al | 1.53 | MC |
| SRR4947508 | root | Al | 4.50 | MC |
| SRR4947509 | root | Al | 4.14 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.27 | MC |
| SRR6502095 | root | control | 0.43 | MC |
| SRR6502096 | root | control | 0.40 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.90 | MC |
| SRR6502107 | root | control | 2.07 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.28 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.27 | MC |
| SRR6441555 | seedling | wild_type | 0.25 | MC |
| SRR2154084 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 1.26 | MC |
| SRR3098743 | seedling | wt | 0.94 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.70 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.08 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.05 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.66 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.27 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.04 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.92 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.37 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.86 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |