| SRR4457257 | 2nd_leaf | DAH20 | 0.55 | MC |
| SRR6320473 | carpel | wt | 1.56 | MC |
| SRR5560727 | caryopsis | wild_type | 0.30 | MC |
| SRR4947495 | root | control | 1.24 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.52 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.71 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.29 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.03 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR7265379 | embryo | 1hN | 0.35 | MC |
| SRR7265383 | embryo | 3hA | 0.50 | MC |
| SRR7265384 | embryo | 3hA | 0.44 | MC |
| SRR7265390 | embryo | 12hA | 0.51 | MC |
| SRR2338868 | endosprem | high_temperature | 1.14 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.28 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.33 | MC |
| SRR1213691 | flower | wt | 0.33 | MC |
| SRR8060835 | leaf | wild_type | 2.24 | MC |
| SRR8060837 | leaf | wild_type | 2.44 | MC |
| SRR8240824 | leaf | wild_type | 0.45 | MC |
| SRR8240826 | leaf | wild_type | 0.33 | MC |
| SRR8240820 | leaf | wild_type | 0.39 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.60 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.68 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.31 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.54 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.46 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.54 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.54 | MC |
| SRR1761529 | leaf | drought | 0.50 | MC |
| SRR1761531 | leaf | control | 0.46 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.65 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.07 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.81 | MC |
| SRR6417969 | leaf | H2O_control | 0.38 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.71 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.25 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.91 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.26 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR1213692 | leaf | wt | 0.49 | MC |
| SRR1213693 | leaf | wt | 0.23 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502088 | leaf | control | 0.42 | MC |
| SRR6502090 | leaf | control | 0.39 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.55 | MC |
| SRR5856927 | leaf | control | 0.51 | MC |
| SRR5856928 | leaf | control | 0.59 | MC |
| SRR5856929 | leaf | control | 0.78 | MC |
| SRR5856930 | leaf | salt | 0.21 | MC |
| SRR5856931 | leaf | salt | 0.27 | MC |
| SRR5856932 | leaf | salt | 0.72 | MC |
| SRR5856933 | leaf | control | 0.50 | MC |
| SRR5856934 | leaf | control | 0.81 | MC |
| SRR5856935 | leaf | control | 0.57 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.18 | MC |
| SRR5856938 | leaf | salt | 0.46 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.45 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.99 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.33 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.01 | MC |
| SRR6168973 | leaf | none (control) | 1.11 | MC |
| SRR6168975 | leaf | none (control) | 1.04 | MC |
| SRR6168979 | leaf | none (control) | 0.44 | MC |
| SRR6168981 | leaf | none (control) | 0.97 | MC |
| SRR8582889 | panicle | AM | 0.21 | MC |
| SRR8582890 | panicle | AM | 0.44 | MC |
| SRR8582891 | panicle | PM | 0.52 | MC |
| SRR8582893 | panicle | PM | 0.22 | MC |
| SRR5110431 | panicle | Dawn | 0.52 | MC |
| SRR5110432 | panicle | Dawn | 0.51 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.16 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.52 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.83 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.75 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.38 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.88 | MC |
| SRR5110446 | panicle | Dusk | 0.72 | MC |
| SRR5110448 | panicle | Dusk | 0.74 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.76 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.57 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.99 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.39 | MC |
| SRR1213695 | root | wt | 0.42 | MC |
| SRR4947478 | root | control | 0.55 | MC |
| SRR4947483 | root | Al | 0.81 | MC |
| SRR4947491 | root | Al | 0.65 | MC |
| SRR4947494 | root | control | 0.88 | MC |
| SRR4947502 | root | control | 0.56 | MC |
| SRR4947503 | root | control | 1.02 | MC |
| SRR4947507 | root | Al | 0.81 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.54 | MC |
| SRR2154082 | seedling | wt | 1.11 | MC |
| SRR2154083 | seedling | wt | 1.38 | MC |
| SRR2154084 | seedling | wt | 0.93 | MC |
| SRR2154087 | seedling | wt | 0.63 | MC |
| SRR3098741 | seedling | wt | 0.20 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.41 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.48 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.98 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.77 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.68 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.84 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.89 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.41 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.35 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.39 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.42 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.79 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.30 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.40 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.62 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.71 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.54 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.31 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.12 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.27 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.21 | MC |