| SRR4457249 | 2nd_leaf | DAH4 | 0.68 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.18 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.55 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.64 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.43 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.53 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.70 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.77 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.02 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.24 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.93 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.78 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.77 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.64 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.93 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.98 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.92 | MC |
| SRR6320473 | carpel | wt | 1.15 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR2338866 | endosprem | control | 2.87 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.75 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.53 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.86 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.48 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.51 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.34 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.44 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.57 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.79 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.74 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.61 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.46 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.86 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.93 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.77 | MC |
| SRR1213691 | flower | wt | 0.49 | MC |
| SRR8240824 | leaf | wild_type | 0.39 | MC |
| SRR8240818 | leaf | wild_type | 1.59 | MC |
| SRR8240819 | leaf | wild_type | 0.54 | MC |
| SRR8240820 | leaf | wild_type | 0.23 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.66 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.71 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.80 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.53 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.63 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.80 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.07 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.72 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.49 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.99 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.52 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.77 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.01 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.66 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.88 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.94 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.72 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.12 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.14 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.91 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.68 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.99 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.81 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.43 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.07 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.49 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.89 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.12 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.90 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.01 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.89 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.12 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.90 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.01 | MC |
| SRR1761528 | leaf | drought | 4.89 | MC |
| SRR1761529 | leaf | drought | 5.12 | MC |
| SRR1761530 | leaf | control | 1.90 | MC |
| SRR1761531 | leaf | control | 4.01 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.87 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.60 | MC |
| SRR1213693 | leaf | wt | 0.22 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.21 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.08 | MC |
| SRR6502089 | leaf | control | 3.33 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.58 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.67 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.35 | MC |
| SRR6502100 | leaf | control | 4.15 | MC |
| SRR6502101 | leaf | control | 1.93 | MC |
| SRR6502102 | leaf | control | 2.48 | MC |
| SRR5856927 | leaf | control | 1.27 | MC |
| SRR5856928 | leaf | control | 1.24 | MC |
| SRR5856929 | leaf | control | 1.45 | MC |
| SRR5856930 | leaf | salt | 1.01 | MC |
| SRR5856931 | leaf | salt | 1.29 | MC |
| SRR5856932 | leaf | salt | 1.22 | MC |
| SRR5856933 | leaf | control | 1.68 | MC |
| SRR5856934 | leaf | control | 1.69 | MC |
| SRR5856935 | leaf | control | 1.54 | MC |
| SRR5856937 | leaf | salt | 1.63 | MC |
| SRR5856938 | leaf | salt | 1.42 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.62 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.70 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.79 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.06 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.03 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.18 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.00 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.60 | MC |
| SRR6168973 | leaf | none (control) | 0.26 | MC |
| SRR6168974 | leaf | none (control) | 0.35 | MC |
| SRR6168975 | leaf | none (control) | 1.33 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.56 | MC |
| SRR6168979 | leaf | none (control) | 0.31 | MC |
| SRR6168980 | leaf | none (control) | 0.28 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.18 | MC |
| SRR8582891 | panicle | PM | 4.18 | MC |
| SRR8582892 | panicle | PM | 5.15 | MC |
| SRR8582893 | panicle | PM | 3.66 | MC |
| SRR5110429 | panicle | Dawn | 2.57 | MC |
| SRR5110430 | panicle | Dawn | 3.80 | MC |
| SRR5110431 | panicle | Dawn | 2.41 | MC |
| SRR4947496 | root | control | 4.68 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.03 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.77 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.47 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.93 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.17 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.12 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.27 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.59 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.83 | MC |
| SRR5110445 | panicle | Dusk | 2.03 | MC |
| SRR5110446 | panicle | Dusk | 3.02 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.89 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.36 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.44 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5126147 | root | "mock,1_day" | 2.22 | MC |
| SRR5126149 | root | "mock,1_day" | 3.21 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.49 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.29 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126155 | root | "mock,7_days" | 2.88 | MC |
| SRR5126157 | root | "mock,7_days" | 1.67 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.10 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.01 | MC |
| SRR5126165 | root | "mock,14_days" | 2.60 | MC |
| SRR5126167 | root | "mock,14_days" | 1.23 | MC |
| SRR5126169 | root | "mock,14_days" | 0.86 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.41 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.90 | MC |
| SRR1213694 | root | wt | 1.49 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR4947479 | root | control | 3.90 | MC |
| SRR4947480 | root | control | 4.19 | MC |
| SRR4947481 | root | control | 4.61 | MC |
| SRR4947487 | root | control | 3.75 | MC |
| SRR4947488 | root | control | 4.00 | MC |
| SRR4947489 | root | control | 4.55 | MC |
| SRR4947492 | root | Al | 4.76 | MC |
| SRR4947503 | root | control | 4.86 | MC |
| SRR4947504 | root | control | 3.40 | MC |
| SRR4947505 | root | control | 2.87 | MC |
| SRR4947508 | root | Al | 4.17 | MC |
| SRR4947509 | root | Al | 3.10 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.43 | MC |
| SRR6441554 | seedling | wild_type | 1.44 | MC |
| SRR6441555 | seedling | wild_type | 1.59 | MC |
| SRR2154086 | seedling | wt | 4.09 | MC |
| SRR2154087 | seedling | wt | 3.11 | MC |
| SRR3098742 | seedling | wt | 1.24 | MC |
| SRR3098743 | seedling | wt | 1.27 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.54 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.79 | MC |
| SRR1944583 | seedling | no_treatment | 0.50 | MC |
| SRR358791 | seedling | wt | 3.69 | MC |
| SRR358792 | seedling | wt | 3.65 | MC |
| SRR358793 | seedling | wt | 3.18 | MC |
| SRR358794 | seedling | wt | 3.03 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.81 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.73 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.41 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.29 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.38 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.10 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.13 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.09 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.20 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.86 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.59 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.93 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.14 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.62 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.89 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.05 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.66 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.40 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.41 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.75 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.27 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.21 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.43 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.56 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.82 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.40 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.27 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.94 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.43 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.35 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.76 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.27 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.23 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.70 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.13 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.94 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.86 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.91 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.05 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.06 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.94 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.28 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.24 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.83 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.17 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.06 | MC |