| SRR4457250 | 2nd_leaf | DAH4 | 4.63 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.62 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.56 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.77 | MC |
| SRR3745125 | anther | wt | 3.95 | MC |
| SRR3745126 | anther | wt | 1.04 | MC |
| SRR3745127 | anther | wt | 3.38 | MC |
| SRR5560727 | caryopsis | wild_type | 4.21 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.29 | MC |
| SRR4947495 | root | control | 1.71 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.18 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.96 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.07 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.60 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.56 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.93 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.72 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.72 | MC |
| SRR2338869 | endosprem | high_temperature | 2.09 | MC |
| SRR8060835 | leaf | wild_type | 1.47 | MC |
| SRR8060836 | leaf | wild_type | 1.40 | MC |
| SRR8060837 | leaf | wild_type | 2.04 | MC |
| SRR8240824 | leaf | wild_type | 1.61 | MC |
| SRR8240825 | leaf | wild_type | 0.32 | MC |
| SRR8240826 | leaf | wild_type | 0.47 | MC |
| SRR8240818 | leaf | wild_type | 0.62 | MC |
| SRR8240819 | leaf | wild_type | 0.65 | MC |
| SRR8240820 | leaf | wild_type | 2.27 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.03 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.16 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.20 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.94 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.43 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.29 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.89 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.73 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.78 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.23 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.43 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.78 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.26 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.43 | MC |
| SRR1761528 | leaf | drought | 1.78 | MC |
| SRR1761529 | leaf | drought | 4.24 | MC |
| SRR1761531 | leaf | control | 3.43 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.13 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.88 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.86 | MC |
| SRR6417967 | leaf | H2O_control | 2.18 | MC |
| SRR6417968 | leaf | H2O_control | 1.33 | MC |
| SRR6417969 | leaf | H2O_control | 2.68 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.96 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.34 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.90 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.97 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.67 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.45 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.04 | MC |
| SRR1213692 | leaf | wt | 3.37 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.78 | MC |
| SRR6502088 | leaf | control | 3.51 | MC |
| SRR6502089 | leaf | control | 3.75 | MC |
| SRR6502090 | leaf | control | 1.78 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.23 | MC |
| SRR5856927 | leaf | control | 0.48 | MC |
| SRR5856928 | leaf | control | 1.10 | MC |
| SRR5856929 | leaf | control | 0.89 | MC |
| SRR5856930 | leaf | salt | 0.49 | MC |
| SRR5856931 | leaf | salt | 0.84 | MC |
| SRR5856932 | leaf | salt | 0.84 | MC |
| SRR5856933 | leaf | control | 0.95 | MC |
| SRR5856934 | leaf | control | 0.85 | MC |
| SRR5856935 | leaf | control | 2.04 | MC |
| SRR5856936 | leaf | salt | 0.68 | MC |
| SRR5856937 | leaf | salt | 0.69 | MC |
| SRR5856938 | leaf | salt | 1.49 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.28 | MC |
| SRR6168973 | leaf | none (control) | 2.94 | MC |
| SRR6168974 | leaf | none (control) | 3.47 | MC |
| SRR6168975 | leaf | none (control) | 2.96 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.64 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.27 | MC |
| SRR6168979 | leaf | none (control) | 1.36 | MC |
| SRR6168980 | leaf | none (control) | 1.64 | MC |
| SRR8582888 | panicle | AM | 2.15 | MC |
| SRR8582889 | panicle | AM | 1.17 | MC |
| SRR8582891 | panicle | PM | 5.77 | MC |
| SRR8582892 | panicle | PM | 6.11 | MC |
| SRR8582893 | panicle | PM | 3.46 | MC |
| SRR5110430 | panicle | Dawn | 3.97 | MC |
| SRR4947496 | root | control | 1.94 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.19 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.55 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.32 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.59 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.77 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.57 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.38 | MC |
| SRR5110445 | panicle | Dusk | 4.50 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.05 | MC |
| SRR5126147 | root | "mock,1_day" | 3.42 | MC |
| SRR5126148 | root | "mock,1_day" | 3.79 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.25 | MC |
| SRR4947478 | root | control | 4.21 | MC |
| SRR4947479 | root | control | 2.38 | MC |
| SRR4947480 | root | control | 1.27 | MC |
| SRR4947481 | root | control | 3.11 | MC |
| SRR4947482 | root | Al | 2.82 | MC |
| SRR4947484 | root | Al | 4.07 | MC |
| SRR4947485 | root | Al | 3.10 | MC |
| SRR4947488 | root | control | 2.47 | MC |
| SRR4947489 | root | control | 1.99 | MC |
| SRR4947490 | root | Al | 3.56 | MC |
| SRR4947491 | root | Al | 3.06 | MC |
| SRR4947492 | root | Al | 2.79 | MC |
| SRR4947494 | root | control | 1.14 | MC |
| SRR4947497 | root | control | 3.14 | MC |
| SRR4947498 | root | Al | 1.85 | MC |
| SRR4947499 | root | Al | 2.77 | MC |
| SRR4947500 | root | Al | 2.15 | MC |
| SRR4947501 | root | Al | 5.03 | MC |
| SRR4947502 | root | control | 2.65 | MC |
| SRR4947503 | root | control | 1.92 | MC |
| SRR4947504 | root | control | 3.10 | MC |
| SRR4947505 | root | control | 4.59 | MC |
| SRR4947506 | root | Al | 2.33 | MC |
| SRR4947507 | root | Al | 2.20 | MC |
| SRR4947508 | root | Al | 2.43 | MC |
| SRR4947509 | root | Al | 2.63 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.93 | MC |
| SRR1740436 | root_differentiation_zone | wt | 3.04 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.04 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.21 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.47 | MC |
| SRR6441555 | seedling | wild_type | 2.98 | MC |
| SRR2154086 | seedling | wt | 3.62 | MC |
| SRR2154083 | seedling | wt | 2.88 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.58 | MC |
| SRR358793 | seedling | wt | 5.57 | MC |
| SRR358794 | seedling | wt | 4.19 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.65 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.44 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.86 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.42 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.07 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.32 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.48 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.29 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.17 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.55 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.34 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 9.30 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.89 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.15 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.86 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.24 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.87 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.34 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.14 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.02 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.36 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.59 | MC |