| SRR4457250 | 2nd_leaf | DAH4 | 0.84 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.90 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.46 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.64 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.34 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.38 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.12 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.62 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.62 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.53 | MC |
| SRR6320473 | carpel | wt | 4.44 | MC |
| SRR6320498 | carpel | wt | 4.37 | MC |
| SRR5560727 | caryopsis | wild_type | 0.42 | MC |
| SRR5560728 | caryopsis | wild_type | 0.98 | MC |
| SRR5560729 | caryopsis | wild_type | 0.72 | MC |
| SRR7265412 | coleoptile | 4dA | 1.50 | MC |
| SRR7265413 | coleoptile | 4dA | 1.16 | MC |
| SRR7265414 | coleoptile | 4dA | 2.04 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.44 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.44 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.59 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.35 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.38 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.43 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.49 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.59 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.74 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.77 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.68 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.53 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.46 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.55 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.83 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.60 | MC |
| SRR8060835 | leaf | wild_type | 0.57 | MC |
| SRR8060836 | leaf | wild_type | 0.52 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.41 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.99 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.54 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.99 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.54 | MC |
| SRR1761528 | leaf | drought | 0.99 | MC |
| SRR1761531 | leaf | control | 0.54 | MC |
| SRR504365 | leaf | wt | 0.19 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.44 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.70 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.35 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.00 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR1213692 | leaf | wt | 1.71 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502088 | leaf | control | 0.35 | MC |
| SRR6502089 | leaf | control | 0.53 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.96 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.15 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.95 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR5110429 | panicle | Dawn | 1.26 | MC |
| SRR5110430 | panicle | Dawn | 1.18 | MC |
| SRR5110432 | panicle | Dawn | 2.86 | MC |
| SRR4947496 | root | control | 0.98 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.26 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.27 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.08 | MC |
| SRR5110446 | panicle | Dusk | 1.49 | MC |
| SRR5110447 | panicle | Dusk | 0.89 | MC |
| SRR5110448 | panicle | Dusk | 0.96 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.70 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.83 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.77 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.19 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.41 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.63 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.44 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.42 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126149 | root | "mock,1_day" | 0.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.20 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.99 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.74 | MC |
| SRR5126153 | root | "mock,7_days" | 0.65 | MC |
| SRR5126155 | root | "mock,7_days" | 0.89 | MC |
| SRR5126157 | root | "mock,7_days" | 1.00 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.48 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.33 | MC |
| SRR5126165 | root | "mock,14_days" | 2.17 | MC |
| SRR5126167 | root | "mock,14_days" | 1.74 | MC |
| SRR5126169 | root | "mock,14_days" | 1.17 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.28 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.25 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.59 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.87 | MC |
| SRR1213695 | root | wt | 3.15 | MC |
| SRR4947480 | root | control | 0.77 | MC |
| SRR4947481 | root | control | 1.08 | MC |
| SRR4947485 | root | Al | 0.97 | MC |
| SRR4947488 | root | control | 0.86 | MC |
| SRR4947497 | root | control | 0.79 | MC |
| SRR4947500 | root | Al | 0.67 | MC |
| SRR4947501 | root | Al | 0.63 | MC |
| SRR4947505 | root | control | 0.98 | MC |
| SRR4947508 | root | Al | 0.77 | MC |
| SRR4947509 | root | Al | 0.98 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.07 | MC |
| SRR6502094 | root | control | 0.61 | MC |
| SRR6502096 | root | control | 0.51 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502106 | root | control | 0.43 | MC |
| SRR6502108 | root | control | 1.09 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR2154086 | seedling | wt | 0.51 | MC |
| SRR2154082 | seedling | wt | 1.36 | MC |
| SRR2154083 | seedling | wt | 1.94 | MC |
| SRR2154084 | seedling | wt | 2.01 | MC |
| SRR2154085 | seedling | wt | 0.84 | MC |
| SRR3098741 | seedling | wt | 0.51 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.39 | MC |
| SRR358793 | seedling | wt | 0.76 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.49 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.61 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.59 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.42 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.27 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.03 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.40 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.49 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.16 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.37 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.31 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.21 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.79 | MC |