| SRR4457249 | 2nd_leaf | DAH4 | 4.36 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.94 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.53 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.13 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.15 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.19 | MC |
| SRR6320473 | carpel | wt | 2.75 | MC |
| SRR5560727 | caryopsis | wild_type | 1.18 | MC |
| SRR5560728 | caryopsis | wild_type | 1.06 | MC |
| SRR5560729 | caryopsis | wild_type | 0.87 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.49 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.90 | MC |
| SRR7265409 | coleoptile | 3dN | 0.64 | MC |
| SRR7265416 | coleoptile | 4dN | 0.53 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.54 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.47 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.99 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.00 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265377 | embryo | 1hA | 0.98 | MC |
| SRR7265379 | embryo | 1hN | 0.31 | MC |
| SRR7265381 | embryo | 1hN | 0.37 | MC |
| SRR7265385 | embryo | 3hN | 0.53 | MC |
| SRR7265387 | embryo | 3hN | 0.52 | MC |
| SRR7265389 | embryo | 12hA | 0.50 | MC |
| SRR7265391 | embryo | 12hN | 0.79 | MC |
| SRR7265392 | embryo | 12hN | 0.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.75 | MC |
| SRR1213691 | flower | wt | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.55 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.72 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.72 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.38 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.60 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.21 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.05 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.25 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.35 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.75 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.33 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.76 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.89 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.61 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.16 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.03 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.16 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.32 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.18 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.16 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.41 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.08 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.34 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.57 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.04 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.21 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.91 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.84 | MC |
| SRR504365 | leaf | wt | 1.83 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.12 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.38 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.06 | MC |
| SRR6417969 | leaf | H2O_control | 2.78 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.82 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.76 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.28 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.63 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.20 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.02 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.91 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.86 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.29 | MC |
| SRR1213692 | leaf | wt | 0.38 | MC |
| SRR1213693 | leaf | wt | 0.69 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.16 | MC |
| SRR6502100 | leaf | control | 3.69 | MC |
| SRR5856929 | leaf | control | 1.83 | MC |
| SRR5856933 | leaf | control | 2.23 | MC |
| SRR5856934 | leaf | control | 1.73 | MC |
| SRR6168979 | leaf | none (control) | 1.59 | MC |
| SRR8582888 | panicle | AM | 2.91 | MC |
| SRR8582890 | panicle | AM | 2.24 | MC |
| SRR8582891 | panicle | PM | 1.93 | MC |
| SRR8582892 | panicle | PM | 0.77 | MC |
| SRR8582893 | panicle | PM | 1.49 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.25 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.64 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.63 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.97 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.88 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126155 | root | "mock,7_days" | 0.61 | MC |
| SRR5126157 | root | "mock,7_days" | 1.75 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126167 | root | "mock,14_days" | 0.32 | MC |
| SRR5126169 | root | "mock,14_days" | 1.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.44 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.00 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.40 | MC |
| SRR1213695 | root | wt | 0.38 | MC |
| SRR4947480 | root | control | 1.66 | MC |
| SRR4947481 | root | control | 0.57 | MC |
| SRR4947484 | root | Al | 1.34 | MC |
| SRR4947485 | root | Al | 3.42 | MC |
| SRR4947488 | root | control | 1.06 | MC |
| SRR4947489 | root | control | 2.70 | MC |
| SRR4947492 | root | Al | 1.81 | MC |
| SRR4947493 | root | Al | 2.23 | MC |
| SRR4947497 | root | control | 1.21 | MC |
| SRR4947500 | root | Al | 2.19 | MC |
| SRR4947504 | root | control | 0.91 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.22 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.17 | MC |
| SRR6502106 | root | control | 1.09 | MC |
| SRR6502107 | root | control | 0.75 | MC |
| SRR6441555 | seedling | wild_type | 2.65 | MC |
| SRR2154086 | seedling | wt | 1.52 | MC |
| SRR2154082 | seedling | wt | 1.03 | MC |
| SRR2154083 | seedling | wt | 1.48 | MC |
| SRR2154085 | seedling | wt | 1.00 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.90 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.29 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.90 | MC |
| SRR1944583 | seedling | no_treatment | 4.49 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.26 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.34 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.07 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.63 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.34 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.77 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.80 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.41 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.17 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.73 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.83 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.71 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.91 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.26 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.57 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.02 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.15 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.10 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.49 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.55 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.00 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.37 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.53 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.26 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.92 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.93 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.47 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.53 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.23 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.21 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.14 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.61 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.19 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.63 | MC |