| SRR4457249 | 2nd_leaf | DAH4 | 0.84 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.49 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.27 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.36 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.69 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.22 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.97 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.41 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.65 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.90 | MC |
| SRR3745125 | anther | wt | 3.07 | MC |
| SRR5560727 | caryopsis | wild_type | 0.96 | MC |
| SRR5560728 | caryopsis | wild_type | 1.33 | MC |
| SRR4947495 | root | control | 3.25 | MC |
| SRR7265405 | coleoptile | 2dN | 0.36 | MC |
| SRR7265413 | coleoptile | 4dA | 0.48 | MC |
| SRR7265415 | coleoptile | 4dN | 1.40 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.77 | MC |
| SRR7265388 | embryo | 12hA | 0.42 | MC |
| SRR7265390 | embryo | 12hA | 0.44 | MC |
| SRR7265391 | embryo | 12hN | 0.50 | MC |
| SRR7265392 | embryo | 12hN | 0.57 | MC |
| SRR7265394 | embryo | 24hA | 1.17 | MC |
| SRR2338867 | endosprem | control | 0.81 | MC |
| SRR976168 | flag_leaf | wild_type | 1.30 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.67 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.55 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.14 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.36 | MC |
| SRR1213691 | flower | wt | 0.91 | MC |
| SRR8060836 | leaf | wild_type | 0.51 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.61 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.75 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.70 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.47 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.66 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.14 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.20 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.84 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.19 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.31 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.99 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.09 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.09 | MC |
| SRR1761528 | leaf | drought | 1.09 | MC |
| SRR504365 | leaf | wt | 0.38 | MC |
| SRR6417969 | leaf | H2O_control | 0.56 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.35 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.11 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR1213693 | leaf | wt | 1.85 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR6502088 | leaf | control | 0.43 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.07 | MC |
| SRR5856935 | leaf | control | 0.23 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.27 | MC |
| SRR6168973 | leaf | none (control) | 0.49 | MC |
| SRR6168974 | leaf | none (control) | 0.74 | MC |
| SRR6168975 | leaf | none (control) | 0.91 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.61 | MC |
| SRR8582888 | panicle | AM | 0.46 | MC |
| SRR8582891 | panicle | PM | 0.58 | MC |
| SRR8582893 | panicle | PM | 0.30 | MC |
| SRR5110429 | panicle | Dawn | 0.81 | MC |
| SRR5110430 | panicle | Dawn | 1.85 | MC |
| SRR5110431 | panicle | Dawn | 1.83 | MC |
| SRR5110432 | panicle | Dawn | 1.00 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.95 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.56 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.05 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.44 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.54 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.35 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.13 | MC |
| SRR5110445 | panicle | Dusk | 1.09 | MC |
| SRR5110446 | panicle | Dusk | 0.95 | MC |
| SRR5110447 | panicle | Dusk | 0.73 | MC |
| SRR5110448 | panicle | Dusk | 1.23 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.14 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.61 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.54 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.78 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126155 | root | "mock,7_days" | 0.29 | MC |
| SRR5126157 | root | "mock,7_days" | 0.47 | MC |
| SRR5126167 | root | "mock,14_days" | 0.31 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213694 | root | wt | 0.36 | MC |
| SRR1213695 | root | wt | 1.55 | MC |
| SRR4947479 | root | control | 1.51 | MC |
| SRR4947481 | root | control | 1.05 | MC |
| SRR4947483 | root | Al | 0.47 | MC |
| SRR4947485 | root | Al | 0.70 | MC |
| SRR4947488 | root | control | 0.93 | MC |
| SRR4947491 | root | Al | 1.05 | MC |
| SRR4947492 | root | Al | 0.65 | MC |
| SRR4947494 | root | control | 1.50 | MC |
| SRR4947497 | root | control | 1.18 | MC |
| SRR4947498 | root | Al | 1.13 | MC |
| SRR4947500 | root | Al | 1.95 | MC |
| SRR4947501 | root | Al | 6.17 | MC |
| SRR4947503 | root | control | 0.78 | MC |
| SRR4947504 | root | control | 0.76 | MC |
| SRR4947506 | root | Al | 1.12 | MC |
| SRR4947508 | root | Al | 0.63 | MC |
| SRR4947509 | root | Al | 0.92 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.09 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.44 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.97 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.71 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.91 | MC |
| SRR2154086 | seedling | wt | 2.83 | MC |
| SRR2154084 | seedling | wt | 0.68 | MC |
| SRR2154087 | seedling | wt | 1.29 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.19 | MC |
| SRR358793 | seedling | wt | 4.85 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.03 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.53 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.61 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.90 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.29 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.18 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.34 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.12 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.10 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.37 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.95 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.54 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.59 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.04 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.73 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.37 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.09 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.21 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.11 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.73 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.38 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.96 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.39 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.34 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.38 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.04 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |