| SRR358797 | callus | wt | 1.27 | MC |
| SRR6320473 | carpel | wt | 1.25 | MC |
| SRR5560727 | caryopsis | wild_type | 0.38 | MC |
| SRR5560728 | caryopsis | wild_type | 2.59 | MC |
| SRR5560729 | caryopsis | wild_type | 4.02 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.89 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.72 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.25 | MC |
| SRR4947495 | root | control | 0.78 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.05 | MC |
| SRR7265408 | coleoptile | 3dA | 1.98 | MC |
| SRR7265409 | coleoptile | 3dN | 0.38 | MC |
| SRR7265410 | coleoptile | 3dN | 0.41 | MC |
| SRR7265411 | coleoptile | 3dN | 0.67 | MC |
| SRR7265413 | coleoptile | 4dA | 1.27 | MC |
| SRR7265414 | coleoptile | 4dA | 0.63 | MC |
| SRR7265417 | coleoptile | 4dN | 0.61 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.48 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.85 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.76 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR7265388 | embryo | 12hA | 0.64 | MC |
| SRR7265395 | embryo | 24hA | 1.41 | MC |
| SRR7265396 | embryo | 24hA | 0.96 | MC |
| SRR2338866 | endosprem | control | 1.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.66 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.05 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.00 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.60 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.26 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.37 | MC |
| SRR5856927 | leaf | control | 0.23 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856933 | leaf | control | 0.35 | MC |
| SRR5856934 | leaf | control | 0.61 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.19 | MC |
| SRR6168973 | leaf | none (control) | 2.32 | MC |
| SRR6168974 | leaf | none (control) | 0.49 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.23 | MC |
| SRR5110429 | panicle | Dawn | 2.29 | MC |
| SRR5110430 | panicle | Dawn | 5.49 | MC |
| SRR5110431 | panicle | Dawn | 4.08 | MC |
| SRR5110432 | panicle | Dawn | 2.13 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.68 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.19 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.86 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.03 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.68 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.91 | MC |
| SRR5110445 | panicle | Dusk | 4.28 | MC |
| SRR5110446 | panicle | Dusk | 4.15 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.33 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.45 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.00 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.76 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.71 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.85 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.27 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.35 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.35 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.21 | MC |
| SRR1633185 | panicle | WT | 1.03 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.68 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.45 | MC |
| SRR5126147 | root | "mock,1_day" | 0.49 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.82 | MC |
| SRR5126155 | root | "mock,7_days" | 0.65 | MC |
| SRR5126157 | root | "mock,7_days" | 1.52 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.26 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126165 | root | "mock,14_days" | 2.00 | MC |
| SRR5126167 | root | "mock,14_days" | 0.91 | MC |
| SRR5126169 | root | "mock,14_days" | 1.38 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.70 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.50 | MC |
| SRR4947479 | root | control | 0.93 | MC |
| SRR4947480 | root | control | 1.24 | MC |
| SRR4947482 | root | Al | 0.85 | MC |
| SRR4947483 | root | Al | 1.02 | MC |
| SRR4947484 | root | Al | 1.74 | MC |
| SRR4947485 | root | Al | 0.62 | MC |
| SRR4947487 | root | control | 1.01 | MC |
| SRR4947489 | root | control | 0.67 | MC |
| SRR4947490 | root | Al | 0.75 | MC |
| SRR4947491 | root | Al | 1.47 | MC |
| SRR4947492 | root | Al | 1.10 | MC |
| SRR4947493 | root | Al | 1.40 | MC |
| SRR4947494 | root | control | 0.59 | MC |
| SRR4947498 | root | Al | 1.21 | MC |
| SRR4947499 | root | Al | 0.84 | MC |
| SRR4947500 | root | Al | 0.55 | MC |
| SRR4947501 | root | Al | 1.38 | MC |
| SRR4947502 | root | control | 1.65 | MC |
| SRR4947503 | root | control | 0.86 | MC |
| SRR4947504 | root | control | 1.16 | MC |
| SRR4947505 | root | control | 0.53 | MC |
| SRR4947506 | root | Al | 0.93 | MC |
| SRR4947507 | root | Al | 3.63 | MC |
| SRR4947508 | root | Al | 0.78 | MC |
| SRR4947509 | root | Al | 1.37 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.60 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.71 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.54 | MC |
| SRR6502094 | root | control | 0.43 | MC |
| SRR6502095 | root | control | 0.89 | MC |
| SRR6502096 | root | control | 0.65 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.48 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.77 | MC |
| SRR6502106 | root | control | 0.93 | MC |
| SRR6502107 | root | control | 0.48 | MC |
| SRR6502108 | root | control | 1.88 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.70 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.81 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.36 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.19 | MC |
| SRR6441555 | seedling | wild_type | 0.33 | MC |
| SRR2154086 | seedling | wt | 3.67 | MC |
| SRR2154082 | seedling | wt | 2.00 | MC |
| SRR2154083 | seedling | wt | 1.43 | MC |
| SRR2154084 | seedling | wt | 1.50 | MC |
| SRR2154085 | seedling | wt | 0.59 | MC |
| SRR2154087 | seedling | wt | 3.21 | MC |
| SRR3098743 | seedling | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.27 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.49 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.46 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.96 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.77 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.61 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.62 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.15 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.92 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.43 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.11 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.63 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.67 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.27 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.86 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.14 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.21 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.23 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.93 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.14 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.82 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.84 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.16 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.54 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.03 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.52 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.58 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.29 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.37 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.57 | MC |