| SRR4457249 | 2nd_leaf | DAH4 | 1.27 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.84 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.21 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.50 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.41 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.87 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.21 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.20 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.03 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.81 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.89 | MC |
| SRR5560727 | caryopsis | wild_type | 0.40 | MC |
| SRR5560728 | caryopsis | wild_type | 3.65 | MC |
| SRR5560729 | caryopsis | wild_type | 2.32 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.02 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.02 | MC |
| SRR7265403 | coleoptile | 2dN | 3.56 | MC |
| SRR7265404 | coleoptile | 2dN | 0.96 | MC |
| SRR7265405 | coleoptile | 2dN | 1.07 | MC |
| SRR7265406 | coleoptile | 3dA | 1.88 | MC |
| SRR7265409 | coleoptile | 3dN | 1.85 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.29 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.66 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.79 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.81 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.03 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.22 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.66 | MC |
| SRR7265376 | embryo | 1hA | 0.95 | MC |
| SRR7265395 | embryo | 24hA | 4.26 | MC |
| SRR7265396 | embryo | 24hA | 1.86 | MC |
| SRR976168 | flag_leaf | wild_type | 1.98 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.38 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.76 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.22 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.15 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.03 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.99 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.96 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.32 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.75 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.90 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.17 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.13 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.78 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.93 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.93 | MC |
| SRR1213691 | flower | wt | 1.91 | MC |
| SRR8060836 | leaf | wild_type | 0.33 | MC |
| SRR8060837 | leaf | wild_type | 0.51 | MC |
| SRR8240824 | leaf | wild_type | 0.29 | MC |
| SRR8240826 | leaf | wild_type | 0.39 | MC |
| SRR8240819 | leaf | wild_type | 0.28 | MC |
| SRR8240820 | leaf | wild_type | 0.39 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.60 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.25 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.48 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.73 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.12 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.05 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.77 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.05 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.84 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.57 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.78 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.37 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.54 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.57 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.32 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.99 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.19 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.92 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.41 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.84 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.84 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.35 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.97 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.11 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.48 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.23 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.41 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.11 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.48 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.23 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.41 | MC |
| SRR1761528 | leaf | drought | 2.11 | MC |
| SRR1761529 | leaf | drought | 3.48 | MC |
| SRR1761530 | leaf | control | 2.23 | MC |
| SRR1761531 | leaf | control | 2.41 | MC |
| SRR504365 | leaf | wt | 3.91 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.58 | MC |
| SRR6417967 | leaf | H2O_control | 2.67 | MC |
| SRR6417969 | leaf | H2O_control | 1.38 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.60 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.47 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.57 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.88 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.07 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.10 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.52 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.30 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.98 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.57 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.29 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.99 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.58 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.82 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.23 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.78 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.89 | MC |
| SRR1213692 | leaf | wt | 3.29 | MC |
| SRR1213693 | leaf | wt | 2.98 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.16 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.50 | MC |
| SRR6502088 | leaf | control | 2.80 | MC |
| SRR6502089 | leaf | control | 2.38 | MC |
| SRR6502090 | leaf | control | 2.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.39 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.84 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.29 | MC |
| SRR6502100 | leaf | control | 2.46 | MC |
| SRR6502101 | leaf | control | 2.14 | MC |
| SRR6502102 | leaf | control | 2.09 | MC |
| SRR5856927 | leaf | control | 0.58 | MC |
| SRR5856928 | leaf | control | 0.20 | MC |
| SRR5856929 | leaf | control | 1.92 | MC |
| SRR5856930 | leaf | salt | 1.17 | MC |
| SRR5856934 | leaf | control | 0.72 | MC |
| SRR5856935 | leaf | control | 1.10 | MC |
| SRR5856936 | leaf | salt | 1.15 | MC |
| SRR5856937 | leaf | salt | 1.65 | MC |
| SRR5856938 | leaf | salt | 1.38 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.13 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.58 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.94 | MC |
| SRR6168973 | leaf | none (control) | 1.31 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.49 | MC |
| SRR6168979 | leaf | none (control) | 0.83 | MC |
| SRR6168981 | leaf | none (control) | 1.28 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.14 | MC |
| SRR8582888 | panicle | AM | 1.21 | MC |
| SRR8582889 | panicle | AM | 0.66 | MC |
| SRR8582890 | panicle | AM | 1.30 | MC |
| SRR8582893 | panicle | PM | 0.26 | MC |
| SRR5110430 | panicle | Dawn | 3.64 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.26 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.41 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.82 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.30 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.44 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.28 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.69 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.48 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.33 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.71 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.96 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.00 | MC |
| SRR5126149 | root | "mock,1_day" | 4.39 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.72 | MC |
| SRR5126155 | root | "mock,7_days" | 3.78 | MC |
| SRR5126157 | root | "mock,7_days" | 1.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.13 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.59 | MC |
| SRR5126165 | root | "mock,14_days" | 3.70 | MC |
| SRR5126167 | root | "mock,14_days" | 1.23 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.46 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.21 | MC |
| SRR4947493 | root | Al | 0.86 | MC |
| SRR4947503 | root | control | 1.26 | MC |
| SRR6502095 | root | control | 1.03 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.75 | MC |
| SRR6502107 | root | control | 1.16 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.20 | MC |
| SRR3098741 | seedling | wt | 0.67 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.72 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.11 | MC |
| SRR1944583 | seedling | no_treatment | 2.57 | MC |
| SRR358791 | seedling | wt | 3.75 | MC |
| SRR358792 | seedling | wt | 3.45 | MC |
| SRR358793 | seedling | wt | 1.57 | MC |
| SRR358794 | seedling | wt | 1.85 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.76 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.65 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.35 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.40 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.85 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.55 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.70 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.94 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.33 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.05 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.46 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.02 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.31 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.87 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.90 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.88 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.94 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.83 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.25 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.02 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.26 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.45 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.15 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.78 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.08 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.15 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.56 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.01 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.64 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.73 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.76 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.76 | MC |