| SRR4457250 | 2nd_leaf | DAH4 | 1.01 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.32 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.29 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.42 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.74 | MC |
| SRR3745125 | anther | wt | 3.09 | MC |
| SRR3745126 | anther | wt | 2.55 | MC |
| SRR3745127 | anther | wt | 3.10 | MC |
| SRR358797 | callus | wt | 8.60 | MC |
| SRR5560729 | caryopsis | wild_type | 1.70 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR4947495 | root | control | 0.81 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.78 | MC |
| SRR7265413 | coleoptile | 4dA | 4.92 | MC |
| SRR7265414 | coleoptile | 4dA | 4.24 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.73 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.18 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.12 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.01 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.06 | MC |
| SRR7265376 | embryo | 1hA | 1.85 | MC |
| SRR7265377 | embryo | 1hA | 1.63 | MC |
| SRR7265378 | embryo | 1hA | 2.15 | MC |
| SRR7265379 | embryo | 1hN | 2.44 | MC |
| SRR7265380 | embryo | 1hN | 1.87 | MC |
| SRR7265381 | embryo | 1hN | 1.62 | MC |
| SRR7265382 | embryo | 3hA | 3.12 | MC |
| SRR7265383 | embryo | 3hA | 3.76 | MC |
| SRR7265384 | embryo | 3hA | 3.30 | MC |
| SRR7265385 | embryo | 3hN | 3.12 | MC |
| SRR7265386 | embryo | 3hN | 2.02 | MC |
| SRR7265387 | embryo | 3hN | 1.71 | MC |
| SRR7265388 | embryo | 12hA | 4.67 | MC |
| SRR7265390 | embryo | 12hA | 3.95 | MC |
| SRR7265391 | embryo | 12hN | 4.77 | MC |
| SRR7265392 | embryo | 12hN | 3.18 | MC |
| SRR7265394 | embryo | 24hA | 5.18 | MC |
| SRR7265395 | embryo | 24hA | 4.59 | MC |
| SRR7265396 | embryo | 24hA | 4.23 | MC |
| SRR7265398 | embryo | 24hN | 4.74 | MC |
| SRR7265399 | embryo | 24hN | 4.44 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.23 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.84 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.93 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.49 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.60 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.88 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.84 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.59 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.46 | MC |
| SRR1213691 | flower | wt | 0.64 | MC |
| SRR8060837 | leaf | wild_type | 0.20 | MC |
| SRR8240818 | leaf | wild_type | 0.23 | MC |
| SRR8240819 | leaf | wild_type | 0.80 | MC |
| SRR8240820 | leaf | wild_type | 0.21 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.24 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.88 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.55 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.41 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.17 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.42 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.95 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.35 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.95 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.07 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.80 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.08 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.05 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.95 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.54 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.95 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.54 | MC |
| SRR1761530 | leaf | control | 2.95 | MC |
| SRR1761531 | leaf | control | 2.54 | MC |
| SRR504365 | leaf | wt | 1.81 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.33 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.34 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.66 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.27 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.51 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.07 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.12 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.43 | MC |
| SRR6502088 | leaf | control | 0.31 | MC |
| SRR6502089 | leaf | control | 2.75 | MC |
| SRR6502090 | leaf | control | 1.95 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.23 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.02 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502101 | leaf | control | 0.79 | MC |
| SRR6502102 | leaf | control | 4.34 | MC |
| SRR5856927 | leaf | control | 0.64 | MC |
| SRR5856928 | leaf | control | 0.40 | MC |
| SRR5856932 | leaf | salt | 0.36 | MC |
| SRR5856933 | leaf | control | 1.25 | MC |
| SRR5856934 | leaf | control | 0.77 | MC |
| SRR5856935 | leaf | control | 1.11 | MC |
| SRR5856936 | leaf | salt | 0.52 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.46 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.69 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 7.27 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.26 | MC |
| SRR6168973 | leaf | none (control) | 1.09 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR5110430 | panicle | Dawn | 0.76 | MC |
| SRR5110431 | panicle | Dawn | 1.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.28 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.91 | MC |
| SRR5110445 | panicle | Dusk | 0.52 | MC |
| SRR5110446 | panicle | Dusk | 0.68 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.82 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.49 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.34 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.22 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.69 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.21 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.53 | MC |
| SRR1633185 | panicle | WT | 4.05 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.40 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.22 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.91 | MC |
| SRR5126147 | root | "mock,1_day" | 1.79 | MC |
| SRR5126148 | root | "mock,1_day" | 0.38 | MC |
| SRR5126149 | root | "mock,1_day" | 1.58 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.77 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.44 | MC |
| SRR5126153 | root | "mock,7_days" | 1.76 | MC |
| SRR5126155 | root | "mock,7_days" | 1.79 | MC |
| SRR5126157 | root | "mock,7_days" | 0.75 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.38 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.25 | MC |
| SRR5126165 | root | "mock,14_days" | 2.18 | MC |
| SRR5126167 | root | "mock,14_days" | 2.24 | MC |
| SRR5126169 | root | "mock,14_days" | 0.84 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.06 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.36 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.69 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.36 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 0.84 | MC |
| SRR4947478 | root | control | 0.55 | MC |
| SRR4947480 | root | control | 0.62 | MC |
| SRR4947481 | root | control | 0.89 | MC |
| SRR4947483 | root | Al | 1.23 | MC |
| SRR4947484 | root | Al | 0.78 | MC |
| SRR4947485 | root | Al | 0.75 | MC |
| SRR4947487 | root | control | 1.12 | MC |
| SRR4947488 | root | control | 0.51 | MC |
| SRR4947489 | root | control | 2.05 | MC |
| SRR4947490 | root | Al | 2.89 | MC |
| SRR4947491 | root | Al | 0.48 | MC |
| SRR4947492 | root | Al | 1.84 | MC |
| SRR4947493 | root | Al | 0.69 | MC |
| SRR4947494 | root | control | 0.88 | MC |
| SRR4947498 | root | Al | 1.68 | MC |
| SRR4947499 | root | Al | 0.69 | MC |
| SRR4947500 | root | Al | 0.62 | MC |
| SRR4947501 | root | Al | 0.73 | MC |
| SRR4947502 | root | control | 0.72 | MC |
| SRR4947503 | root | control | 2.35 | MC |
| SRR4947504 | root | control | 2.48 | MC |
| SRR4947505 | root | control | 0.52 | MC |
| SRR4947508 | root | Al | 0.61 | MC |
| SRR4947509 | root | Al | 0.85 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.98 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.99 | MC |
| SRR6502094 | root | control | 0.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.73 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.87 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.08 | MC |
| SRR6502106 | root | control | 1.21 | MC |
| SRR6502107 | root | control | 0.96 | MC |
| SRR6502108 | root | control | 0.66 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.05 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.60 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.94 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.81 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.40 | MC |
| SRR2154086 | seedling | wt | 1.41 | MC |
| SRR2154082 | seedling | wt | 1.83 | MC |
| SRR2154083 | seedling | wt | 2.95 | MC |
| SRR2154084 | seedling | wt | 2.12 | MC |
| SRR2154085 | seedling | wt | 0.55 | MC |
| SRR3098741 | seedling | wt | 0.74 | MC |
| SRR3098742 | seedling | wt | 0.54 | MC |
| SRR3098743 | seedling | wt | 1.16 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.72 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.03 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.47 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.03 | MC |
| SRR1944583 | seedling | no_treatment | 4.00 | MC |
| SRR358791 | seedling | wt | 7.53 | MC |
| SRR358792 | seedling | wt | 6.63 | MC |
| SRR358794 | seedling | wt | 6.40 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.30 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.51 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.64 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.21 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.01 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.17 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.09 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.14 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.37 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.95 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.25 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.50 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.45 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.15 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.00 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.93 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.09 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.71 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.12 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.28 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.89 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.67 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.69 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.18 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.03 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.52 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.43 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.72 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.46 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.63 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.52 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.99 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.77 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.25 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.38 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.29 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.57 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.57 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.54 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.51 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.20 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.61 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |